This documentation aims to be a comprehensive guide to Pykaryote, a computer model for simulating the evolution of biological complexity. It serves as a guide for both users and developers.
The tutorial introduces the Pykaryote model and describes how to install and run Pykaryote.
This guide is for developers who wish to contribute to Pykaryote. It describes the tools and work flow associated with modifying and building Pykaryote.
This document describes the design of Pykaryote. It provides a detailed description of Pykaryote’s organisms, their genomes and configuration options, as well as a high level description of the program design.