Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
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1 | MIC2206A12 | hg19 | TCCGGAGA-GGCTCTGA | 2-106131 | N | 718258 | 682 | 100.00 | 5,413,306 | 1.26 | 100.00 | 0.00 | 94.65 | 37.59 |
1 | MIC2206A37 | hg19 | CGCTCATT-ATAGAGGC | 2-106139 | N | 718258 | 1,016 | 100.00 | 8,059,802 | 1.87 | 100.00 | 0.00 | 95.06 | 37.73 |
1 | MIC2206A8 | hg19 | ATTACTCG-GTACTGAC | 2-106130 | N | 718258 | 613 | 100.00 | 4,866,056 | 1.13 | 100.00 | 0.00 | 95.27 | 37.80 |
1 | MIC2208A19 | hg19 | CGCTCATT-CCTATCCT | 2-106132 | N | 356717 | 57 | 100.00 | 450,712 | 0.10 | 100.00 | 0.00 | 94.28 | 37.47 |
1 | MIC2208A41 | hg19 | GAATTCGT-TATAGCCT | 2-106133 | N | 356717 | 1,637 | 100.00 | 12,994,024 | 3.02 | 100.00 | 0.00 | 95.23 | 37.80 |
1 | MIC2208A42 | hg19 | GAATTCGT-ATAGAGGC | 2-106134 | N | 356717 | 1,630 | 100.00 | 12,937,224 | 3.00 | 100.00 | 0.00 | 94.91 | 37.69 |
1 | MIC2208A43 | hg19 | GAATTCGT-CCTATCCT | 2-106135 | N | 356717 | 1,704 | 100.00 | 13,527,130 | 3.14 | 100.00 | 0.00 | 94.79 | 37.67 |
1 | MIC2208A44 | hg19 | GAATTCGT-GGCTCTGA | 2-106136 | N | 356717 | 1,665 | 100.00 | 13,215,230 | 3.07 | 100.00 | 0.00 | 95.18 | 37.78 |
1 | MIC2208A45 | hg19 | GAATTCGT-AGGCGAAG | 2-106137 | N | 356717 | 1,514 | 100.00 | 12,012,722 | 2.79 | 100.00 | 0.00 | 95.60 | 37.92 |
1 | MIC2208A54 | hg19 | CTGAAGCT-TAATCTTA | 2-106138 | N | 356717 | 1,896 | 100.00 | 15,050,418 | 3.49 | 100.00 | 0.00 | 95.42 | 37.86 |
1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 41,877 | 100.00 | 332,353,474 | 77.13 | 0.00 | 0.00 | 93.83 | 37.29 |
2 | MIC2206A12 | hg19 | TCCGGAGA-GGCTCTGA | 2-106131 | N | 718258 | 662 | 100.00 | 5,255,578 | 1.22 | 100.00 | 0.00 | 94.45 | 37.54 |
2 | MIC2206A37 | hg19 | CGCTCATT-ATAGAGGC | 2-106139 | N | 718258 | 991 | 100.00 | 7,867,802 | 1.83 | 100.00 | 0.00 | 94.99 | 37.72 |
2 | MIC2206A8 | hg19 | ATTACTCG-GTACTGAC | 2-106130 | N | 718258 | 608 | 100.00 | 4,821,660 | 1.12 | 100.00 | 0.00 | 95.11 | 37.76 |
2 | MIC2208A19 | hg19 | CGCTCATT-CCTATCCT | 2-106132 | N | 356717 | 55 | 100.00 | 439,278 | 0.10 | 100.00 | 0.00 | 94.05 | 37.41 |
2 | MIC2208A41 | hg19 | GAATTCGT-TATAGCCT | 2-106133 | N | 356717 | 1,596 | 100.00 | 12,668,174 | 2.94 | 100.00 | 0.00 | 95.06 | 37.76 |
2 | MIC2208A42 | hg19 | GAATTCGT-ATAGAGGC | 2-106134 | N | 356717 | 1,593 | 100.00 | 12,639,938 | 2.94 | 100.00 | 0.00 | 94.81 | 37.67 |
2 | MIC2208A43 | hg19 | GAATTCGT-CCTATCCT | 2-106135 | N | 356717 | 1,655 | 100.00 | 13,134,170 | 3.05 | 100.00 | 0.00 | 94.54 | 37.60 |
2 | MIC2208A44 | hg19 | GAATTCGT-GGCTCTGA | 2-106136 | N | 356717 | 1,616 | 100.00 | 12,825,760 | 2.98 | 100.00 | 0.00 | 95.06 | 37.74 |
2 | MIC2208A45 | hg19 | GAATTCGT-AGGCGAAG | 2-106137 | N | 356717 | 1,456 | 100.00 | 11,554,520 | 2.68 | 100.00 | 0.00 | 95.47 | 37.89 |
2 | MIC2208A54 | hg19 | CTGAAGCT-TAATCTTA | 2-106138 | N | 356717 | 1,885 | 100.00 | 14,961,502 | 3.48 | 100.00 | 0.00 | 95.24 | 37.81 |
2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 42,127 | 100.00 | 334,343,408 | 77.66 | 0.00 | 0.00 | 93.62 | 37.24 |
SampleID | Recipe | Operator | Directory |
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MIC2206A12 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_718258/Sample_MIC2206A12 | |
MIC2206A37 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_718258/Sample_MIC2206A37 | |
MIC2206A8 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_718258/Sample_MIC2206A8 | |
MIC2208A19 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A19 | |
MIC2208A41 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A41 | |
MIC2208A42 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A42 | |
MIC2208A43 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A43 | |
MIC2208A44 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A44 | |
MIC2208A45 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A45 | |
MIC2208A54 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Project_356717/Sample_MIC2208A54 | |
lane1 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Undetermined_indices/Sample_lane1 | |
lane2 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned8/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4