Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
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1 | SVE2478A3 | hg19 | AACGTGAT | 2-106140 | N | 294760 | 967 | 100.00 | 7,675,620 | 1.78 | 100.00 | 0.00 | 94.06 | 37.40 |
1 | SVE2496A1 | hg19 | ATTGGCTC | 2-106141 | N | 115393 | 738 | 100.00 | 5,859,186 | 1.36 | 100.00 | 0.00 | 93.85 | 37.32 |
1 | SVE2539A1 | hg19 | AACTCACC | 2-106142 | N | 920822 | 7,279 | 100.00 | 57,771,236 | 13.41 | 100.00 | 0.00 | 95.25 | 37.75 |
1 | SVE2539A2 | hg19 | GCTAACGA | 2-106144 | N | 920822 | 3,365 | 100.00 | 26,704,350 | 6.20 | 100.00 | 0.00 | 94.85 | 37.62 |
1 | SVE2539A3 | hg19 | CAGATCTG | 2-106143 | N | 920822 | 3,131 | 100.00 | 24,847,142 | 5.77 | 100.00 | 0.00 | 95.44 | 37.81 |
1 | SVE2544A1 | hg19 | ATCCTGTA | 2-106147 | N | 445285 | 7,386 | 100.00 | 58,616,488 | 13.60 | 100.00 | 0.00 | 95.38 | 37.80 |
1 | SVE2544A2 | hg19 | CTGTAGCC | 2-106145 | N | 445285 | 2,627 | 100.00 | 20,849,216 | 4.84 | 100.00 | 0.00 | 95.20 | 37.73 |
1 | SVE2544A3 | hg19 | GCTCGGTA | 2-106146 | N | 445285 | 7,932 | 100.00 | 62,953,056 | 14.61 | 100.00 | 0.00 | 95.16 | 37.73 |
1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 20,866 | 100.00 | 165,603,804 | 38.43 | 0.00 | 0.00 | 92.47 | 36.87 |
2 | SVE2478A3 | hg19 | AACGTGAT | 2-106140 | N | 294760 | 973 | 100.00 | 7,718,622 | 1.79 | 100.00 | 0.00 | 93.81 | 37.33 |
2 | SVE2496A1 | hg19 | ATTGGCTC | 2-106141 | N | 115393 | 735 | 100.00 | 5,834,044 | 1.36 | 100.00 | 0.00 | 93.63 | 37.27 |
2 | SVE2539A1 | hg19 | AACTCACC | 2-106142 | N | 920822 | 7,316 | 100.00 | 58,066,772 | 13.49 | 100.00 | 0.00 | 95.04 | 37.69 |
2 | SVE2539A2 | hg19 | GCTAACGA | 2-106144 | N | 920822 | 3,379 | 100.00 | 26,816,942 | 6.23 | 100.00 | 0.00 | 94.62 | 37.56 |
2 | SVE2539A3 | hg19 | CAGATCTG | 2-106143 | N | 920822 | 3,130 | 100.00 | 24,840,616 | 5.77 | 100.00 | 0.00 | 95.25 | 37.76 |
2 | SVE2544A1 | hg19 | ATCCTGTA | 2-106147 | N | 445285 | 7,431 | 100.00 | 58,979,094 | 13.70 | 100.00 | 0.00 | 95.17 | 37.75 |
2 | SVE2544A2 | hg19 | CTGTAGCC | 2-106145 | N | 445285 | 2,640 | 100.00 | 20,950,086 | 4.87 | 100.00 | 0.00 | 94.99 | 37.68 |
2 | SVE2544A3 | hg19 | GCTCGGTA | 2-106146 | N | 445285 | 7,977 | 100.00 | 63,307,780 | 14.71 | 100.00 | 0.00 | 94.95 | 37.67 |
2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 20,664 | 100.00 | 163,997,834 | 38.09 | 0.00 | 0.00 | 92.27 | 36.82 |
SampleID | Recipe | Operator | Directory |
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SVE2478A3 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_294760/Sample_SVE2478A3 | |
SVE2496A1 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_115393/Sample_SVE2496A1 | |
SVE2539A1 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_920822/Sample_SVE2539A1 | |
SVE2539A2 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_920822/Sample_SVE2539A2 | |
SVE2539A3 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_920822/Sample_SVE2539A3 | |
SVE2544A1 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_445285/Sample_SVE2544A1 | |
SVE2544A2 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_445285/Sample_SVE2544A2 | |
SVE2544A3 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Project_445285/Sample_SVE2544A3 | |
lane1 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Undetermined_indices/Sample_lane1 | |
lane2 | Emilia Ottosson | /home/clinical/DEMUX/170406_D00410_0399_BHHKV5BCXY/Unaligned9/Undetermined_indices/Sample_lane2 |
bcl2fastq-1.8.4