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| CompressedSequence (const CompressedSequence &o) |
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CompressedSequence & | operator= (const CompressedSequence &o) |
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| CompressedSequence (CompressedSequence &&o) |
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CompressedSequence & | operator= (CompressedSequence &&o) |
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| CompressedSequence (const char *s) |
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| CompressedSequence (const string &s) |
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| CompressedSequence (const Kmer &km) |
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const char | operator[] (size_t index) const |
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void | clear () |
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size_t | size () const |
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void | toString (char *s, const size_t offset, const size_t length) const |
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string | toString (const size_t offset, const size_t length) const |
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string | toString () const |
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void | toString (char *s) const |
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Kmer | getKmer (size_t offset) const |
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bool | compareKmer (const size_t offset, const Kmer &km) const |
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void | setSequence (const CompressedSequence &o, const size_t start, const size_t length, const size_t offset=0, const bool reversed=false) |
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void | setSequence (const char *s, const size_t length, const size_t offset=0, const bool reversed=false) |
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void | setSequence (const string &s, const size_t length, const size_t offset=0, const bool reversed=false) |
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void | setSequence (const Kmer &km, const size_t length, const size_t offset=0, const bool reversed=false) |
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void | reserveLength (const size_t new_length) |
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CompressedSequence | rev () const |
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size_t | jump (const char *s, const size_t i, int pos, const bool reversed) const |
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size_t | bw_jump (const char *s, const size_t i, int pos, const bool reversed) const |
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int64_t | findKmer (const Kmer &km) const |
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bool | isShort () const |
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