Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1004_S4_L005_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 498165399 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC | 1771655 | 0.3556358999553881 | Illumina Single End PCR Primer 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 407265 | 0.0 | 66.339615 | 9 |
GAGCGTC | 440960 | 0.0 | 61.319584 | 8 |
ATCGGAA | 479765 | 0.0 | 57.21978 | 1 |
AGAGCGT | 480095 | 0.0 | 56.396614 | 7 |
TCGGAAG | 497600 | 0.0 | 54.90785 | 2 |
CGGAAGA | 520580 | 0.0 | 52.376835 | 3 |
AAGAGCG | 540960 | 0.0 | 50.30771 | 6 |
GAAGAGC | 873840 | 0.0 | 31.574928 | 5 |
GGAAGAG | 1276740 | 0.0 | 21.941246 | 4 |
CGCCGTA | 288320 | 0.0 | 19.447144 | 55-59 |
TCGCCGT | 298210 | 0.0 | 18.796837 | 55-59 |
GCCGTAT | 310270 | 0.0 | 18.142391 | 55-59 |
GTCGCCG | 324015 | 0.0 | 17.369194 | 55-59 |
CGTATCA | 328350 | 0.0 | 17.024393 | 60-64 |
TGGTCGC | 337225 | 0.0 | 16.897774 | 50-54 |
CCGTATC | 320070 | 0.0 | 16.816778 | 55-59 |
GTGGTCG | 353035 | 0.0 | 16.151718 | 50-54 |
GGTCGCC | 349760 | 0.0 | 15.573765 | 50-54 |
GCGTCGT | 390680 | 0.0 | 14.460713 | 10-14 |
CGTCGTG | 392775 | 0.0 | 14.399086 | 10-14 |