FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921773_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921773_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142023805
Sequences flagged as poor quality0
Sequence length101
%GC26

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCTGT35500.023.7300194-95
TGCCGTT267200.020.53285294-95
GCTCGTT187200.017.74680194-95
TATGCCT61950.017.1989994-95
TGCCGCT4700.017.1663994-95
TGCCCGT1254.6049827E-617.08560694-95
TGCCGGT11950.016.48193294-95
GAGCTCT117800.016.27661194-95
AGAGCTG60600.016.13327494-95
CGTCTTT375550.015.90425594-95
GGGCTCT14250.015.82000594-95
GCCCGTT3600.015.82000594-95
TTCCGCT2007.8198354E-915.42450694-95
CCCGCTT2252.3210305E-914.76533994-95
TGCCCTT4350.014.728971594-95
GCATTCC1000.00531246614.23774492-93
TTTGCCT19150.014.1264894-95
TATTCCT16700.014.0674994-95
CTCGTAG8900.013.33146694-95
TGCCCTC6950.013.3161294-95