Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1002_S2_L003_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 430185524 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC | 2784757 | 0.6473386119798861 | Illumina Single End PCR Primer 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 520090 | 0.0 | 85.16407 | 9 |
GAGCGTC | 550440 | 0.0 | 80.49984 | 8 |
ATCGGAA | 589600 | 0.0 | 76.88857 | 1 |
AGAGCGT | 586590 | 0.0 | 75.30316 | 7 |
TCGGAAG | 607890 | 0.0 | 74.380035 | 2 |
CGGAAGA | 630250 | 0.0 | 71.537224 | 3 |
AAGAGCG | 647765 | 0.0 | 69.00537 | 6 |
GAAGAGC | 929205 | 0.0 | 48.63535 | 5 |
GGAAGAG | 1285760 | 0.0 | 35.548992 | 4 |
CGCCGTA | 400030 | 0.0 | 22.268465 | 55-59 |
TCGCCGT | 406900 | 0.0 | 21.668232 | 55-59 |
GCCGTAT | 418095 | 0.0 | 21.330196 | 55-59 |
GTCGCCG | 442595 | 0.0 | 20.452822 | 55-59 |
CGTATCA | 432060 | 0.0 | 20.380535 | 60-64 |
CCGTATC | 425205 | 0.0 | 20.314047 | 55-59 |
TGGTCGC | 449910 | 0.0 | 20.167156 | 50-54 |
GTGGTCG | 467595 | 0.0 | 19.499815 | 50-54 |
GGTCGCC | 463745 | 0.0 | 19.110138 | 50-54 |
TCTCGGT | 513120 | 0.0 | 18.120836 | 45-49 |
GCGTCGT | 498685 | 0.0 | 17.976921 | 10-14 |