FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921773_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921773_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128125879
Sequences flagged as poor quality0
Sequence length20-101
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGA450.00104529784.68127494-95
AGACCGG555.2639007E-755.25319792-93
CTTCCGA902.4270157E-630.6962851
CCTTAAG600.00977061526.3111021
TCCGATC1251.0893164E-625.2586561
CCGATCT1251.0926306E-625.2498532
AAACTCT1000.00485819119.7264482
TCCATAT1257.882358E-418.9439931
GCTCGTA2200.00649246413.81329992-93
TTCCGAT3100.00254807510.1813932
CTAGAGT12800.09.2499961
CTGTGGA6504.8913716E-79.1076891
CTATGAT10907.2759576E-128.6899051
CTAATGA6101.9816294E-58.4109261
CCATTTT4750.00104992378.3087691
CTGTGAT9051.2321834E-88.2858171
CAAAGAG10653.947207E-108.1527361
ATGCCGT4800.00268580628.08651694-95
CAAAGAT15750.08.0186211
CTGAAAG6655.832226E-57.71528531