FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921770_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921770_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100000000
Sequences flagged as poor quality0
Sequence length100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCTCT1550.078.849821
TCTTCCG1750.072.509025
CTCTTCC1800.070.4977344
CCGGCCC200.00216591870.48035494
GCTCTTC1850.068.592393
CGCTCTT1850.066.051932
CTTCCGA2150.059.0065776
CTAAACC450.001015766441.76613694
CCGATCT3350.037.8698929
TTCTCTG500.001702996237.598792
TCCGATC3450.036.7722138
TTCCGAT4450.031.6764377
CCAATAT700.00883351726.8609281
CTAATTC700.00883351726.8609281
TCCGCGT350.00884571926.85333830-31
TAACCCC700.00885160926.84965994
CGATCTG1203.433137E-623.4992433
CTCCAGC1201.8430634E-423.49345294
ATCACAC1201.8430634E-423.49345294
CGATCTT2905.456968E-1222.6889273