Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1006_S6_L007_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 453238610 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC | 1770173 | 0.390560945370475 | Illumina Single End PCR Primer 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 404220 | 0.0 | 67.819176 | 9 |
GAGCGTC | 436420 | 0.0 | 62.93128 | 8 |
ATCGGAA | 476130 | 0.0 | 58.61765 | 1 |
AGAGCGT | 476530 | 0.0 | 57.760166 | 7 |
TCGGAAG | 492610 | 0.0 | 56.578556 | 2 |
CGGAAGA | 515425 | 0.0 | 53.955246 | 3 |
AAGAGCG | 534650 | 0.0 | 51.845016 | 6 |
GAAGAGC | 832285 | 0.0 | 33.636795 | 5 |
GGAAGAG | 1206105 | 0.0 | 23.554815 | 4 |
CGCCGTA | 284845 | 0.0 | 20.234474 | 55-59 |
TCGCCGT | 294325 | 0.0 | 19.530518 | 55-59 |
GCCGTAT | 303895 | 0.0 | 19.019491 | 55-59 |
GTCGCCG | 323765 | 0.0 | 18.237375 | 55-59 |
CGTATCA | 320510 | 0.0 | 17.905842 | 60-64 |
TGGTCGC | 335315 | 0.0 | 17.75113 | 50-54 |
GTGGTCG | 352150 | 0.0 | 16.983215 | 50-54 |
CCGTATC | 313685 | 0.0 | 16.903313 | 55-59 |
GGTCGCC | 348110 | 0.0 | 15.811203 | 50-54 |
GCGTCGT | 386475 | 0.0 | 15.310764 | 10-14 |
TCTCGGT | 396605 | 0.0 | 15.270081 | 45-49 |