FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921694_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921694_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162506120
Sequences flagged as poor quality0
Sequence length101
%GC26

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA1004.9118946E-528.5385251
CTTCTGT38750.027.62455494-95
TGCCGTT141100.026.3583594-95
TCCGATC1302.912461E-421.9579933
TATGCCT58950.021.03004394-95
GAGCTCT101450.020.02203294-95
CGTCTTT181100.019.78614494-95
GCTCGTT90600.018.94632194-95
CCGATCT1559.5383433E-418.4139942
CCCGTCT800.001161878317.88059294-95
CTGCTTA4850.017.20469394-95
CCATTAA1952.2544089E-417.0743311
ATGCCGC2156.366463E-1116.63310894-95
TATTCCT12950.015.28019794-95
AGCCGTC2555.2750693E-1114.96180392-93
TCTTCTT130250.014.84443994-95
CTGCTTT50300.014.55093994-95
ACCGTCT4400.014.09044892-93
TAGCTCT9650.014.08212394-95
TGCCTTT19000.013.80256394-95