Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_2wk_SRR921696_1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 116247060 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-101 |
%GC | 25 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCCGA | 120 | 9.741563E-4 | 42.1226 | 94-95 |
GACCGGA | 70 | 0.006477898 | 28.623474 | 92-93 |
CTTCCGA | 90 | 7.7175406E-5 | 26.706566 | 1 |
CCTTGAA | 80 | 0.0012166443 | 25.037405 | 1 |
TCCGATC | 125 | 7.129791E-4 | 19.228725 | 1 |
CCGATCT | 125 | 7.149117E-4 | 19.220993 | 4 |
CAAACAT | 155 | 1.4482181E-4 | 18.091545 | 1 |
CCATTTA | 155 | 0.0030110118 | 15.507038 | 1 |
AAACCTG | 95 | 0.00430419 | 14.696318 | 58-59 |
ATGCCGT | 545 | 7.17895E-5 | 12.775052 | 94-95 |
TTCCGAT | 240 | 0.003979251 | 11.679167 | 2 |
TATGCCG | 650 | 3.6980424E-4 | 10.71139 | 94-95 |
CTTGACG | 970 | 3.6379788E-12 | 9.498728 | 1 |
CAGGTGG | 985 | 5.456968E-12 | 9.354076 | 1 |
CCATTTT | 360 | 0.0077131446 | 8.902188 | 1 |
CTGAGAT | 730 | 2.2306449E-7 | 8.780241 | 1 |
GTATGCC | 575 | 6.5616175E-4 | 8.711492 | 92-93 |
CTTGTGG | 725 | 1.6907554E-5 | 7.735695 | 1 |
CTTGGAT | 1055 | 1.7731509E-8 | 7.594284 | 1 |
CTATAGA | 1125 | 7.345079E-9 | 7.4778385 | 1 |