Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1001_S1_L002_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 383592756 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC | 4438528 | 1.157093800801598 | Illumina Single End PCR Primer 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 678850 | 0.0 | 101.818695 | 9 |
GAGCGTC | 706565 | 0.0 | 97.75716 | 8 |
ATCGGAA | 739925 | 0.0 | 94.443115 | 1 |
AGAGCGT | 742145 | 0.0 | 93.208145 | 7 |
TCGGAAG | 757090 | 0.0 | 92.04605 | 2 |
CGGAAGA | 776840 | 0.0 | 89.49462 | 3 |
AAGAGCG | 796205 | 0.0 | 87.250305 | 6 |
GAAGAGC | 1044485 | 0.0 | 66.66515 | 5 |
GGAAGAG | 1361350 | 0.0 | 51.436493 | 4 |
CGCCGTA | 555560 | 0.0 | 24.914326 | 55-59 |
TCGCCGT | 563260 | 0.0 | 24.542583 | 55-59 |
GCCGTAT | 570185 | 0.0 | 24.290798 | 55-59 |
CGTATCA | 584370 | 0.0 | 23.472351 | 60-64 |
GTCGCCG | 605550 | 0.0 | 23.45864 | 55-59 |
TGGTCGC | 612235 | 0.0 | 23.379646 | 50-54 |
CCGTATC | 577965 | 0.0 | 22.991083 | 55-59 |
GTGGTCG | 629420 | 0.0 | 22.842203 | 50-54 |
GGTCGCC | 626440 | 0.0 | 22.062164 | 50-54 |
TCTCGGT | 666365 | 0.0 | 21.741302 | 45-49 |
GCGTCGT | 658960 | 0.0 | 21.563826 | 10-14 |