FastQCFastQC Report
Sat 20 Feb 2016
P4107_1002_S2_L003_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1002_S2_L003_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430185524
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG25325640.5887143705932792TruSeq Adapter, Index 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA4750050.096.116131
TCGGAAG4943500.092.049952
CGGAAGA5151350.088.1711653
AGAGCAC7567950.059.8997347
AGCACAC7885600.057.3636679
GAGCACA8002800.056.623218
GAAGAGC8178150.055.6942145
AAGAGCA10393200.044.006556
GGAAGAG11569550.039.7876324
TATGCCG3865000.024.19950545-49
CTCGTAT3547700.023.50491140-44
TCTCGTA3569550.023.28833840-44
CGTATGC3990050.023.11917345-49
ATGCCGT4083750.022.79922345-49
TATCTCG3647850.022.4804840-44
CGCTCAT4155750.022.26644530-34
GCCGTCT4134950.022.03558350-54
TGCCGTC4108300.022.00417345-49
TCGTATG3696250.021.85785340-44
ATCTCGT3807200.021.85026440-44