FastQCFastQC Report
Sun 21 Feb 2016
P4107_1003_S3_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1003_S3_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431379000
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG33193820.7694815927525448TruSeq Adapter, Index 7 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA5631850.0101.644451
TCGGAAG5824400.098.2162252
CGGAAGA6048050.094.5147863
AGAGCAC8448350.067.728767
AGCACAC8765400.065.220839
GAGCACA8918750.064.143558
GAAGAGC9096150.063.087745
AAGAGCA11305800.050.864996
GGAAGAG12480700.046.279154
TATGCCG4720400.025.54590845-49
CTCGTAT4315250.024.86286440-44
CGTATGC4837750.024.7122645-49
TCTCGTA4331550.024.6963440-44
ATGCCGT4942100.024.27378845-49
GCCGTCT5006100.023.66059150-54
GTCACGA5139700.023.4960725-29
ATCTCGT4555800.023.49598540-44
ACGAGAT5232600.023.08480630-34
CGTCTTC5221700.022.90301150-54
TGCCGTC4964050.022.84457645-49