FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921769_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921769_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20400069
Sequences flagged as poor quality0
Sequence length20-100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCTTCC157.843908E-491.028574
GCTCTTC157.843908E-491.028573
TCTTCCG157.843908E-491.028575
ACGCTCT200.002454367568.292691
CGCTCTT200.00245739968.271432
CTTCCGA200.00245739968.271436
TCCGATC451.9493466E-550.5871731
CCGATCT451.9529398E-550.5714262
CTAGGTA1750.002881292315.6097571
CAAATTG2156.6115946E-414.8232181
CAGGAGT2156.6115946E-414.8232181
CTGTAAT1950.005915174314.0087561
CAAATAG2600.00277114712.2576621
CTTAAAT3950.00577741549.2209531
CTGATTT4050.0070948398.9932761
CAAATAT6851.4118794E-58.6404371
CATAGAA4900.0035534198.362371
CAGTGTT5250.00661002947.80487871
CTTTTGT8251.7188198E-57.7260411
CATTGAT5450.0092341847.5184611