FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921770_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921770_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99944444
Sequences flagged as poor quality0
Sequence length20-100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACATGA202.1258988E-591.291211
CGCTCTT1250.083.97372
TCTTCCG1350.081.1295555
ACGCTCT1300.080.757611
CTCTTCC1300.080.743954
GCTCTTC1400.074.9765243
CTTCCGA1550.070.646096
CCAAGTT301.585187E-460.86081
AAAACCC755.638867E-1154.7747231
GAACACA250.005883703554.765462
AAACCCC801.05501385E-1051.3426172
AACCCCC955.711627E-1043.2358933
CCGATCT2650.041.3324242
TCCGATC2700.040.573871
CCATATA500.00196562336.5164831
TTCCGAT3250.033.692757
ATACCTT550.0031395733.191193
TCTTCAA550.003143713833.1822557
ACCCCCC1258.365532E-932.8592764
CAAATAC753.8903102E-430.43041