FastQCFastQC Report
Sat 20 Feb 2016
P4107_1002_S2_L003_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1002_S2_L003_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430185524
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC27847570.6473386119798861Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG5200900.085.164079
GAGCGTC5504400.080.499848
ATCGGAA5896000.076.888571
AGAGCGT5865900.075.303167
TCGGAAG6078900.074.3800352
CGGAAGA6302500.071.5372243
AAGAGCG6477650.069.005376
GAAGAGC9292050.048.635355
GGAAGAG12857600.035.5489924
CGCCGTA4000300.022.26846555-59
TCGCCGT4069000.021.66823255-59
GCCGTAT4180950.021.33019655-59
GTCGCCG4425950.020.45282255-59
CGTATCA4320600.020.38053560-64
CCGTATC4252050.020.31404755-59
TGGTCGC4499100.020.16715650-54
GTGGTCG4675950.019.49981550-54
GGTCGCC4637450.019.11013850-54
TCTCGGT5131200.018.12083645-49
GCGTCGT4986850.017.97692110-14