FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921696_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921696_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116247060
Sequences flagged as poor quality0
Sequence length20-101
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCCGA1209.741563E-442.122694-95
GACCGGA700.00647789828.62347492-93
CTTCCGA907.7175406E-526.7065661
CCTTGAA800.001216644325.0374051
TCCGATC1257.129791E-419.2287251
CCGATCT1257.149117E-419.2209934
CAAACAT1551.4482181E-418.0915451
CCATTTA1550.003011011815.5070381
AAACCTG950.0043041914.69631858-59
ATGCCGT5457.17895E-512.77505294-95
TTCCGAT2400.00397925111.6791672
TATGCCG6503.6980424E-410.7113994-95
CTTGACG9703.6379788E-129.4987281
CAGGTGG9855.456968E-129.3540761
CCATTTT3600.00771314468.9021881
CTGAGAT7302.2306449E-78.7802411
GTATGCC5756.5616175E-48.71149292-93
CTTGTGG7251.6907554E-57.7356951
CTTGGAT10551.7731509E-87.5942841
CTATAGA11257.345079E-97.47783851