Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1006_S6_L007_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 453238610 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG | 1479147 | 0.326350616952073 | TruSeq Adapter, Index 19 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 361430 | 0.0 | 75.20775 | 1 |
TCGGAAG | 381400 | 0.0 | 70.62691 | 2 |
CGGAAGA | 403930 | 0.0 | 66.58881 | 3 |
AGAGCAC | 656490 | 0.0 | 41.21277 | 7 |
AGCACAC | 689080 | 0.0 | 39.316544 | 9 |
GAGCACA | 703295 | 0.0 | 38.511574 | 8 |
GAAGAGC | 723530 | 0.0 | 37.552357 | 5 |
AAGAGCA | 959180 | 0.0 | 28.55025 | 6 |
GGAAGAG | 1080370 | 0.0 | 25.437468 | 4 |
TATGCCG | 272185 | 0.0 | 22.13268 | 45-49 |
CTCGTAT | 250550 | 0.0 | 21.211536 | 40-44 |
TCTCGTA | 252035 | 0.0 | 21.057798 | 40-44 |
CGTATGC | 284990 | 0.0 | 20.909302 | 45-49 |
ATGCCGT | 296675 | 0.0 | 20.170788 | 45-49 |
TATCTCG | 260350 | 0.0 | 20.1375 | 40-44 |
GCCGTCT | 302575 | 0.0 | 19.458652 | 50-54 |
ATCTCGT | 276220 | 0.0 | 19.25025 | 40-44 |
CGTCTTC | 324600 | 0.0 | 18.43349 | 50-54 |
CCGTCTT | 326800 | 0.0 | 18.307178 | 50-54 |
TGCCGTC | 296885 | 0.0 | 18.117672 | 45-49 |