FastQCFastQC Report
Sat 20 Feb 2016
P4107_1004_S4_L005_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1004_S4_L005_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498165399
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC17716550.3556358999553881Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG4072650.066.3396159
GAGCGTC4409600.061.3195848
ATCGGAA4797650.057.219781
AGAGCGT4800950.056.3966147
TCGGAAG4976000.054.907852
CGGAAGA5205800.052.3768353
AAGAGCG5409600.050.307716
GAAGAGC8738400.031.5749285
GGAAGAG12767400.021.9412464
CGCCGTA2883200.019.44714455-59
TCGCCGT2982100.018.79683755-59
GCCGTAT3102700.018.14239155-59
GTCGCCG3240150.017.36919455-59
CGTATCA3283500.017.02439360-64
TGGTCGC3372250.016.89777450-54
CCGTATC3200700.016.81677855-59
GTGGTCG3530350.016.15171850-54
GGTCGCC3497600.015.57376550-54
GCGTCGT3906800.014.46071310-14
CGTCGTG3927750.014.39908610-14