Alignment
Sequences analysed in total |
128125879 |
Single-end alignments with a unique best hit |
97745852 |
Sequences without alignments under any condition |
11557697 |
Sequences that did not map uniquely |
18822330 |
Genomic sequence context not extractable (edges of chromosomes) |
4 |
Cytosine Methylation
Total C's analysed |
1556887362 |
Methylated C's in CpG context |
64856205 |
Methylated C's in CHG context |
3746414 |
Methylated C's in CHH context |
12200224 |
Methylated C's in Unknown context |
5 |
Unmethylated C's in CpG context |
20074609 |
Unmethylated C's in CHG context |
394817230 |
Unmethylated C's in CHH context |
1061192680 |
Unmethylated C's in Unknown context |
276 |
Percentage methylation (CpG context) |
76.4% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
49415480 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
48330368 |
original bottom strand |
Deduplication
Alignments analysed |
97745848 |
Unique alignments |
91566412 |
Duplicates removed |
6179436 |
Duplicated alignments were found at 2369116 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1472451692 |
Methylated C's in CpG context |
55160868 |
Methylated C's in CHG context |
3583627 |
Methylated C's in CHH context |
11458218 |
Unmethylated C's in CpG context |
17617658 |
Unmethylated C's in CHG context |
375850399 |
Unmethylated C's in CHH context |
1008780922 |
Percentage methylation (CpG context) |
75.8% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
M-Bias Plot