FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921769_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921769_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20413156
Sequences flagged as poor quality0
Sequence length100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCTTCC353.869718E-880.5657654
GCTCTTC353.869718E-880.5657653
TCTTCCG409.763244E-870.495045
ACGCTCT353.6356523E-667.15871
CGCTCTT353.642268E-667.138142
CTTCCGA452.2060885E-762.6622626
GCACACT405.679634E-446.99888294
TCCGATC503.0124636E-546.9966968
CCGATCT503.0124636E-546.9966969
TTCCGAT757.453318E-637.597367
GTTACAC1002.996476E-416.44928792-93
CATGTCT4001.4696343E-714.09966594
TCAGTCA1351.8376182E-413.92532392-93
CAAAGGT2050.006662674213.7593431
TCCAGTT1300.00218377512.6530888-89
CTTCAGT1350.002898536212.18441890-91
TGATCTC15750.011.63781894
TATGCCG11600.010.93939694
CTTGTAA3050.007180351310.7894311
TGTCTGA4408.446793E-510.68156494