FastQCFastQC Report
Sat 20 Feb 2016
P4107_1006_S6_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1006_S6_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453238610
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG14791470.326350616952073TruSeq Adapter, Index 19 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA3614300.075.207751
TCGGAAG3814000.070.626912
CGGAAGA4039300.066.588813
AGAGCAC6564900.041.212777
AGCACAC6890800.039.3165449
GAGCACA7032950.038.5115748
GAAGAGC7235300.037.5523575
AAGAGCA9591800.028.550256
GGAAGAG10803700.025.4374684
TATGCCG2721850.022.1326845-49
CTCGTAT2505500.021.21153640-44
TCTCGTA2520350.021.05779840-44
CGTATGC2849900.020.90930245-49
ATGCCGT2966750.020.17078845-49
TATCTCG2603500.020.137540-44
GCCGTCT3025750.019.45865250-54
ATCTCGT2762200.019.2502540-44
CGTCTTC3246000.018.4334950-54
CCGTCTT3268000.018.30717850-54
TGCCGTC2968850.018.11767245-49