FastQCFastQC Report
Sat 20 Feb 2016
P4107_1001_S1_L002_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1001_S1_L002_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383592756
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC44385281.157093800801598Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG6788500.0101.8186959
GAGCGTC7065650.097.757168
ATCGGAA7399250.094.4431151
AGAGCGT7421450.093.2081457
TCGGAAG7570900.092.046052
CGGAAGA7768400.089.494623
AAGAGCG7962050.087.2503056
GAAGAGC10444850.066.665155
GGAAGAG13613500.051.4364934
CGCCGTA5555600.024.91432655-59
TCGCCGT5632600.024.54258355-59
GCCGTAT5701850.024.29079855-59
CGTATCA5843700.023.47235160-64
GTCGCCG6055500.023.4586455-59
TGGTCGC6122350.023.37964650-54
CCGTATC5779650.022.99108355-59
GTGGTCG6294200.022.84220350-54
GGTCGCC6264400.022.06216450-54
TCTCGGT6663650.021.74130245-49
GCGTCGT6589600.021.56382610-14