Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1003_S3_L004_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 431379000 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC | 3696561 | 0.8569172351922555 | Illumina Single End PCR Primer 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 593815 | 0.0 | 95.88222 | 9 |
GAGCGTC | 625190 | 0.0 | 91.07477 | 8 |
ATCGGAA | 657675 | 0.0 | 87.594894 | 1 |
AGAGCGT | 659820 | 0.0 | 86.44123 | 7 |
TCGGAAG | 676810 | 0.0 | 84.92936 | 2 |
CGGAAGA | 698210 | 0.0 | 82.2224 | 3 |
AAGAGCG | 716140 | 0.0 | 79.92011 | 6 |
GAAGAGC | 1001505 | 0.0 | 57.440235 | 5 |
GGAAGAG | 1351940 | 0.0 | 42.88031 | 4 |
CGCCGTA | 484705 | 0.0 | 24.607847 | 55-59 |
TCGCCGT | 492610 | 0.0 | 24.17295 | 55-59 |
GCCGTAT | 504690 | 0.0 | 23.664999 | 55-59 |
GTCGCCG | 515340 | 0.0 | 23.118008 | 55-59 |
TGGTCGC | 528180 | 0.0 | 22.907341 | 50-54 |
CGTATCA | 520250 | 0.0 | 22.759886 | 60-64 |
GTGGTCG | 541355 | 0.0 | 22.386406 | 50-54 |
CCGTATC | 515825 | 0.0 | 21.950533 | 55-59 |
GGTCGCC | 538660 | 0.0 | 21.287193 | 50-54 |
TCTCGGT | 578710 | 0.0 | 20.849943 | 45-49 |
GCGTCGT | 577845 | 0.0 | 20.764128 | 10-14 |