Alignment
Sequences analysed in total |
99944444 |
Single-end alignments with a unique best hit |
85880328 |
Sequences without alignments under any condition |
3179359 |
Sequences that did not map uniquely |
10884757 |
Genomic sequence context not extractable (edges of chromosomes) |
26 |
Cytosine Methylation
Total C's analysed |
1604547987 |
Methylated C's in CpG context |
48204032 |
Methylated C's in CHG context |
1872979 |
Methylated C's in CHH context |
6602284 |
Methylated C's in Unknown context |
1 |
Unmethylated C's in CpG context |
14298683 |
Unmethylated C's in CHG context |
339441953 |
Unmethylated C's in CHH context |
1194128056 |
Unmethylated C's in Unknown context |
76 |
Percentage methylation (CpG context) |
77.1% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
43061055 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
42819247 |
original bottom strand |
Deduplication
Alignments analysed |
85880302 |
Unique alignments |
83381921 |
Duplicates removed |
2498381 |
Duplicated alignments were found at 1279231 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1562840273 |
Methylated C's in CpG context |
44827612 |
Methylated C's in CHG context |
1812592 |
Methylated C's in CHH context |
6320794 |
Unmethylated C's in CpG context |
13404041 |
Unmethylated C's in CHG context |
331308033 |
Unmethylated C's in CHH context |
1165167201 |
Percentage methylation (CpG context) |
77.0% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
M-Bias Plot