FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921768_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921768_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100000000
Sequences flagged as poor quality0
Sequence length100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCATA156.9061655E-493.9924694
ACCCGCT200.002164213770.4943594
TCTTCCG1600.070.493395
ACGCTCT1500.065.813811
CTCTTCC1650.062.6607974
GCTCTTC1700.060.8178333
CGCTCTT1650.059.824242
CTTCCGA2250.050.1286356
TATGCCT450.001014775241.7744394
CCGATCT3700.039.3823662
AAGCACC608.833702E-539.16352594
TCCGATC3800.038.3501551
GACCTCC500.001703398437.59698594
CCCACGT753.279082E-431.3308294
AAACTCA650.00615035828.9291461
TTCCGAT3900.028.9203687
CGATCTA2053.6379788E-1127.5096173
AGCAACC350.00884122526.85613888-89
TCATCTT1057.432587E-526.8546264
AATCCAG909.527882E-426.10901894