FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921694_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921694_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153092768
Sequences flagged as poor quality0
Sequence length20-101
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA1404.2366082E-827.8128721
CCGATCT1601.5578735E-724.314254
TCCGATC1652.0782863E-723.599483
TGGCCCC1000.002862300721.6126775
GGCCCCT1254.2769872E-420.743796
GCCCCTG1050.003801932320.5798977
CCATATA1558.025564E-519.5387921
CTTAGTC1600.002227106816.2241741
ACCATTT2552.2834445E-413.5731671
TTCCGAT3401.4125308E-512.724962
CCGTCTT5903.9963197E-912.6351594-95
GCCGTCT6101.0186341E-1010.79859992-93
CTGATGG5501.836968E-59.439521
CTGGTGT9708.749339E-108.9205081
GCTCGTA4401.6462005E-58.53586486-87
CAAACAA4650.00351024568.3737671
CTGGAGT13701.8189894E-128.2107741
CCATTTT5853.6849518E-48.1351991
TGCCGTC6402.520159E-68.12559192-93
CCATATT4800.004673628.1120871