Alignment
Sequences analysed in total |
99937484 |
Single-end alignments with a unique best hit |
85690327 |
Sequences without alignments under any condition |
3389442 |
Sequences that did not map uniquely |
10857715 |
Genomic sequence context not extractable (edges of chromosomes) |
39 |
Cytosine Methylation
Total C's analysed |
1601467168 |
Methylated C's in CpG context |
48152573 |
Methylated C's in CHG context |
1861779 |
Methylated C's in CHH context |
6584752 |
Methylated C's in Unknown context |
4 |
Unmethylated C's in CpG context |
14292014 |
Unmethylated C's in CHG context |
338854830 |
Unmethylated C's in CHH context |
1191721220 |
Unmethylated C's in Unknown context |
106 |
Percentage methylation (CpG context) |
77.1% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
42966351 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
42723937 |
original bottom strand |
Deduplication
Alignments analysed |
85690288 |
Unique alignments |
83205980 |
Duplicates removed |
2484308 |
Duplicated alignments were found at 1280568 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1559936769 |
Methylated C's in CpG context |
44808244 |
Methylated C's in CHG context |
1801911 |
Methylated C's in CHH context |
6303584 |
Unmethylated C's in CpG context |
13403348 |
Unmethylated C's in CHG context |
330756121 |
Unmethylated C's in CHH context |
1162863561 |
Percentage methylation (CpG context) |
77.0% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
M-Bias Plot