Alignment
Sequences analysed in total |
20400069 |
Single-end alignments with a unique best hit |
17482188 |
Sequences without alignments under any condition |
717541 |
Sequences that did not map uniquely |
2200340 |
Genomic sequence context not extractable (edges of chromosomes) |
4 |
Cytosine Methylation
Total C's analysed |
326018397 |
Methylated C's in CpG context |
9840690 |
Methylated C's in CHG context |
382486 |
Methylated C's in CHH context |
1349951 |
Methylated C's in Unknown context |
0 |
Unmethylated C's in CpG context |
2899152 |
Unmethylated C's in CHG context |
68965476 |
Unmethylated C's in CHH context |
242580642 |
Unmethylated C's in Unknown context |
30 |
Percentage methylation (CpG context) |
77.2% |
Percentage methylation (CHG context) |
0.6% |
Percentage methylation (CHH context) |
0.6% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
8770492 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
8711692 |
original bottom strand |
Deduplication
Alignments analysed |
17482184 |
Unique alignments |
17194498 |
Duplicates removed |
287686 |
Duplicated alignments were found at 74823 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
321444403 |
Methylated C's in CpG context |
9279423 |
Methylated C's in CHG context |
374888 |
Methylated C's in CHH context |
1309578 |
Unmethylated C's in CpG context |
2771305 |
Unmethylated C's in CHG context |
68115589 |
Unmethylated C's in CHH context |
239593620 |
Percentage methylation (CpG context) |
77.0% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
M-Bias Plot