Alignment
Sequences analysed in total |
99942367 |
Single-end alignments with a unique best hit |
85970837 |
Sequences without alignments under any condition |
3096960 |
Sequences that did not map uniquely |
10874570 |
Genomic sequence context not extractable (edges of chromosomes) |
40 |
Cytosine Methylation
Total C's analysed |
1609945962 |
Methylated C's in CpG context |
48410817 |
Methylated C's in CHG context |
1872919 |
Methylated C's in CHH context |
6627385 |
Methylated C's in Unknown context |
2 |
Unmethylated C's in CpG context |
14337271 |
Unmethylated C's in CHG context |
340247268 |
Unmethylated C's in CHH context |
1198450302 |
Unmethylated C's in Unknown context |
88 |
Percentage methylation (CpG context) |
77.2% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
43105354 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
42865443 |
original bottom strand |
Deduplication
Alignments analysed |
85970797 |
Unique alignments |
83465166 |
Duplicates removed |
2505631 |
Duplicated alignments were found at 1292989 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1567978762 |
Methylated C's in CpG context |
45027781 |
Methylated C's in CHG context |
1811762 |
Methylated C's in CHH context |
6342884 |
Unmethylated C's in CpG context |
13443163 |
Unmethylated C's in CHG context |
332074146 |
Unmethylated C's in CHH context |
1169279026 |
Percentage methylation (CpG context) |
77.0% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
M-Bias Plot