Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1001_S1_L002_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 383592756 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG | 3691959 | 0.9624683840484203 | TruSeq Adapter, Index 6 (97% over 35bp) |
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCCCGTATG | 409806 | 0.10683361288501496 | TruSeq Adapter, Index 6 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 612005 | 0.0 | 114.5495 | 1 |
TCGGAAG | 659790 | 0.0 | 105.78833 | 2 |
CGGAAGA | 679610 | 0.0 | 102.61374 | 3 |
AGAGCAC | 893870 | 0.0 | 78.09324 | 7 |
AGCACAC | 920695 | 0.0 | 75.77309 | 9 |
GAGCACA | 934680 | 0.0 | 74.69051 | 8 |
GAAGAGC | 945535 | 0.0 | 73.93864 | 5 |
AAGAGCA | 1144255 | 0.0 | 61.2234 | 6 |
GGAAGAG | 1241510 | 0.0 | 56.577606 | 4 |
TATGCCG | 551925 | 0.0 | 26.192757 | 45-49 |
CTCGTAT | 494210 | 0.0 | 25.669962 | 40-44 |
TCTCGTA | 495155 | 0.0 | 25.534344 | 40-44 |
CGTATGC | 563130 | 0.0 | 25.496574 | 45-49 |
ATGCCGT | 569180 | 0.0 | 25.215378 | 45-49 |
GCCGTCT | 573720 | 0.0 | 24.700195 | 50-54 |
ATCTCGT | 514625 | 0.0 | 24.60856 | 40-44 |
CCGTCTT | 591255 | 0.0 | 24.145378 | 50-54 |
TGCCGTC | 571140 | 0.0 | 24.1047 | 45-49 |
CGTCTTC | 592375 | 0.0 | 24.101439 | 50-54 |
TCGTATG | 506310 | 0.0 | 23.943983 | 40-44 |