Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1004_S4_L005_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 498165399 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG | 1579829 | 0.31712941187230065 | TruSeq Adapter, Index 13 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 355455 | 0.0 | 76.42585 | 1 |
TCGGAAG | 372125 | 0.0 | 72.66091 | 2 |
CGGAAGA | 397275 | 0.0 | 67.99346 | 3 |
AGAGCAC | 680745 | 0.0 | 39.977234 | 7 |
AGCACAC | 713630 | 0.0 | 38.18035 | 9 |
GAGCACA | 725850 | 0.0 | 37.51161 | 8 |
GAAGAGC | 748805 | 0.0 | 36.462044 | 5 |
AAGAGCA | 1010455 | 0.0 | 27.204594 | 6 |
GGAAGAG | 1137420 | 0.0 | 24.373222 | 4 |
TATGCCG | 262120 | 0.0 | 21.743109 | 45-49 |
CTCGTAT | 248915 | 0.0 | 20.81133 | 40-44 |
TCTCGTA | 252320 | 0.0 | 20.456945 | 40-44 |
CGTATGC | 277245 | 0.0 | 20.31953 | 45-49 |
ATGCCGT | 289560 | 0.0 | 19.697657 | 45-49 |
GCCGTCT | 296845 | 0.0 | 18.939909 | 50-54 |
TGCCGTC | 289850 | 0.0 | 18.715157 | 45-49 |
ATCTCGT | 277340 | 0.0 | 18.70814 | 40-44 |
TCGTATG | 265885 | 0.0 | 18.517435 | 40-44 |
CGTCTTC | 322775 | 0.0 | 17.70807 | 50-54 |
CCGTCTT | 325105 | 0.0 | 17.541027 | 50-54 |