Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1002_S2_L003_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 430185524 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG | 2532564 | 0.5887143705932792 | TruSeq Adapter, Index 2 (97% over 36bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 475005 | 0.0 | 96.11613 | 1 |
TCGGAAG | 494350 | 0.0 | 92.04995 | 2 |
CGGAAGA | 515135 | 0.0 | 88.171165 | 3 |
AGAGCAC | 756795 | 0.0 | 59.899734 | 7 |
AGCACAC | 788560 | 0.0 | 57.363667 | 9 |
GAGCACA | 800280 | 0.0 | 56.62321 | 8 |
GAAGAGC | 817815 | 0.0 | 55.694214 | 5 |
AAGAGCA | 1039320 | 0.0 | 44.00655 | 6 |
GGAAGAG | 1156955 | 0.0 | 39.787632 | 4 |
TATGCCG | 386500 | 0.0 | 24.199505 | 45-49 |
CTCGTAT | 354770 | 0.0 | 23.504911 | 40-44 |
TCTCGTA | 356955 | 0.0 | 23.288338 | 40-44 |
CGTATGC | 399005 | 0.0 | 23.119173 | 45-49 |
ATGCCGT | 408375 | 0.0 | 22.799223 | 45-49 |
TATCTCG | 364785 | 0.0 | 22.48048 | 40-44 |
CGCTCAT | 415575 | 0.0 | 22.266445 | 30-34 |
GCCGTCT | 413495 | 0.0 | 22.035583 | 50-54 |
TGCCGTC | 410830 | 0.0 | 22.004173 | 45-49 |
TCGTATG | 369625 | 0.0 | 21.857853 | 40-44 |
ATCTCGT | 380720 | 0.0 | 21.850264 | 40-44 |