Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1005_S5_L006_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 484233426 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC | 2250953 | 0.464848744250051 | Illumina Single End PCR Primer 1 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 487620 | 0.0 | 71.69236 | 9 |
GAGCGTC | 521160 | 0.0 | 67.086555 | 8 |
ATCGGAA | 564365 | 0.0 | 63.37529 | 1 |
AGAGCGT | 561675 | 0.0 | 62.40431 | 7 |
TCGGAAG | 582470 | 0.0 | 61.126637 | 2 |
CGGAAGA | 605855 | 0.0 | 58.60874 | 3 |
AAGAGCG | 623770 | 0.0 | 56.660545 | 6 |
GAAGAGC | 945080 | 0.0 | 37.731815 | 5 |
GGAAGAG | 1346060 | 0.0 | 26.875275 | 4 |
CGCCGTA | 347430 | 0.0 | 20.764845 | 55-59 |
TCGCCGT | 356945 | 0.0 | 20.195885 | 55-59 |
GCCGTAT | 367580 | 0.0 | 19.652597 | 55-59 |
GTCGCCG | 389555 | 0.0 | 18.841797 | 55-59 |
CGTATCA | 384150 | 0.0 | 18.63706 | 60-64 |
TGGTCGC | 400085 | 0.0 | 18.4912 | 50-54 |
CCGTATC | 378790 | 0.0 | 18.08134 | 55-59 |
GTGGTCG | 417700 | 0.0 | 17.790905 | 50-54 |
GGTCGCC | 414470 | 0.0 | 17.015282 | 50-54 |
TCTCGGT | 466720 | 0.0 | 16.122007 | 45-49 |
GCGTCGT | 467730 | 0.0 | 15.611877 | 10-14 |