Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_1wk_SRR921770_1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 99944444 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 21 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACATGA | 20 | 2.1258988E-5 | 91.29121 | 1 |
CGCTCTT | 125 | 0.0 | 83.9737 | 2 |
TCTTCCG | 135 | 0.0 | 81.129555 | 5 |
ACGCTCT | 130 | 0.0 | 80.75761 | 1 |
CTCTTCC | 130 | 0.0 | 80.74395 | 4 |
GCTCTTC | 140 | 0.0 | 74.976524 | 3 |
CTTCCGA | 155 | 0.0 | 70.64609 | 6 |
CCAAGTT | 30 | 1.585187E-4 | 60.8608 | 1 |
AAAACCC | 75 | 5.638867E-11 | 54.774723 | 1 |
GAACACA | 25 | 0.0058837035 | 54.76546 | 2 |
AAACCCC | 80 | 1.05501385E-10 | 51.342617 | 2 |
AACCCCC | 95 | 5.711627E-10 | 43.235893 | 3 |
CCGATCT | 265 | 0.0 | 41.332424 | 2 |
TCCGATC | 270 | 0.0 | 40.57387 | 1 |
CCATATA | 50 | 0.001965623 | 36.516483 | 1 |
TTCCGAT | 325 | 0.0 | 33.69275 | 7 |
ATACCTT | 55 | 0.00313957 | 33.19119 | 3 |
TCTTCAA | 55 | 0.0031437138 | 33.182255 | 7 |
ACCCCCC | 125 | 8.365532E-9 | 32.859276 | 4 |
CAAATAC | 75 | 3.8903102E-4 | 30.4304 | 1 |