Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_2wk_SRR921773_1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 128125879 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-101 |
%GC | 25 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGGA | 45 | 0.001045297 | 84.681274 | 94-95 |
AGACCGG | 55 | 5.2639007E-7 | 55.253197 | 92-93 |
CTTCCGA | 90 | 2.4270157E-6 | 30.696285 | 1 |
CCTTAAG | 60 | 0.009770615 | 26.311102 | 1 |
TCCGATC | 125 | 1.0893164E-6 | 25.258656 | 1 |
CCGATCT | 125 | 1.0926306E-6 | 25.249853 | 2 |
AAACTCT | 100 | 0.004858191 | 19.726448 | 2 |
TCCATAT | 125 | 7.882358E-4 | 18.943993 | 1 |
GCTCGTA | 220 | 0.006492464 | 13.813299 | 92-93 |
TTCCGAT | 310 | 0.002548075 | 10.181393 | 2 |
CTAGAGT | 1280 | 0.0 | 9.249996 | 1 |
CTGTGGA | 650 | 4.8913716E-7 | 9.107689 | 1 |
CTATGAT | 1090 | 7.2759576E-12 | 8.689905 | 1 |
CTAATGA | 610 | 1.9816294E-5 | 8.410926 | 1 |
CCATTTT | 475 | 0.0010499237 | 8.308769 | 1 |
CTGTGAT | 905 | 1.2321834E-8 | 8.285817 | 1 |
CAAAGAG | 1065 | 3.947207E-10 | 8.152736 | 1 |
ATGCCGT | 480 | 0.0026858062 | 8.086516 | 94-95 |
CAAAGAT | 1575 | 0.0 | 8.018621 | 1 |
CTGAAAG | 665 | 5.832226E-5 | 7.7152853 | 1 |