FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921768_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921768_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99937484
Sequences flagged as poor quality0
Sequence length20-100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTCTT1450.084.871772
ACGCTCT1400.084.657241
CTCTTCC1600.076.900814
TCTTCCG1700.072.377235
GCTCTTC1750.070.309273
CCTAATT301.595694E-460.7795561
CTTCCGA2200.055.9278566
CCATTGG353.4175953E-452.0967641
CGGCCGT150.00896643549.23009586-87
CCGATCT3850.043.8034672
TCCGATC3850.042.6246261
CCGATGT500.00197855536.4677351
TTCCGAT3500.036.4566767
CGATCTG1258.485586E-932.8109933
CTCTATT600.0048343530.3897781
CGATCTA1854.7111826E-1027.0961673
CGATCTT3550.023.1063333
CATTTGC1200.00604642518.993611
CTCGGTT2050.00816925513.3418541
CACATAT2600.002745762712.2727971