Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1005_S5_L006_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 484233426 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG | 2106714 | 0.4350616638348299 | TruSeq Adapter, Index 7 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 443445 | 0.0 | 80.47831 | 1 |
TCGGAAG | 460395 | 0.0 | 77.16203 | 2 |
CGGAAGA | 484775 | 0.0 | 73.25691 | 3 |
AGAGCAC | 754525 | 0.0 | 47.29852 | 7 |
AGCACAC | 785935 | 0.0 | 45.406414 | 9 |
GAGCACA | 805120 | 0.0 | 44.35234 | 8 |
GAAGAGC | 827420 | 0.0 | 43.219124 | 5 |
AAGAGCA | 1078245 | 0.0 | 33.33945 | 6 |
GGAAGAG | 1208870 | 0.0 | 29.921013 | 4 |
TATGCCG | 327775 | 0.0 | 22.895527 | 45-49 |
CTCGTAT | 312935 | 0.0 | 21.987406 | 40-44 |
TCTCGTA | 315460 | 0.0 | 21.748 | 40-44 |
CGTATGC | 342170 | 0.0 | 21.698004 | 45-49 |
TCGTATC | 348245 | 0.0 | 21.547026 | 35-39 |
ATGCCGT | 353715 | 0.0 | 21.195148 | 45-49 |
TATCTCG | 324890 | 0.0 | 20.871338 | 40-44 |
GCCGTCT | 360100 | 0.0 | 20.47714 | 50-54 |
ATCTCGT | 341580 | 0.0 | 20.115099 | 40-44 |
ATTCGTA | 372755 | 0.0 | 19.968046 | 35-39 |
TGCCGTC | 355450 | 0.0 | 19.962667 | 45-49 |