FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921695_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921695_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162959139
Sequences flagged as poor quality0
Sequence length101
%GC26

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCTGT36750.027.73433794-95
TGCCGTT141950.025.75160894-95
CGTCTTT187750.021.43572294-95
TATGCCT64100.020.65609294-95
GCTCGTT95750.020.09573694-95
GAGCTCT109850.019.77088594-95
CCGATCT1250.006009667619.0136834
CTTCCGA1300.007521019318.2887941
TACCCAA1600.001183466617.8315751
CCCGTCT1254.4512763E-617.14661892-93
ATTCCCG850.00175674316.8104192-93
TCCGTCT37350.015.42965194-95
GAGCCTG1258.545398E-515.23666990-91
TCCGACT1105.591638E-415.15432994-95
TATTCCT13300.014.86133494-95
CTGCTTT54450.014.60763694-95
TCCCGTT3100.014.59564494-95
TAGCTCT8700.014.50734594-95
TCTTCTT135950.014.50382294-95
GGCCGTC1157.8308414E-414.49593392-93