FastQCFastQC Report
Sat 20 Feb 2016
P4107_1004_S4_L005_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1004_S4_L005_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498165399
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG15798290.31712941187230065TruSeq Adapter, Index 13 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA3554550.076.425851
TCGGAAG3721250.072.660912
CGGAAGA3972750.067.993463
AGAGCAC6807450.039.9772347
AGCACAC7136300.038.180359
GAGCACA7258500.037.511618
GAAGAGC7488050.036.4620445
AAGAGCA10104550.027.2045946
GGAAGAG11374200.024.3732224
TATGCCG2621200.021.74310945-49
CTCGTAT2489150.020.8113340-44
TCTCGTA2523200.020.45694540-44
CGTATGC2772450.020.3195345-49
ATGCCGT2895600.019.69765745-49
GCCGTCT2968450.018.93990950-54
TGCCGTC2898500.018.71515745-49
ATCTCGT2773400.018.7081440-44
TCGTATG2658850.018.51743540-44
CGTCTTC3227750.017.7080750-54
CCGTCTT3251050.017.54102750-54