FastQCFastQC Report
Sun 21 Feb 2016
P4107_1003_S3_L004_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1003_S3_L004_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431379000
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC36965610.8569172351922555Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG5938150.095.882229
GAGCGTC6251900.091.074778
ATCGGAA6576750.087.5948941
AGAGCGT6598200.086.441237
TCGGAAG6768100.084.929362
CGGAAGA6982100.082.22243
AAGAGCG7161400.079.920116
GAAGAGC10015050.057.4402355
GGAAGAG13519400.042.880314
CGCCGTA4847050.024.60784755-59
TCGCCGT4926100.024.1729555-59
GCCGTAT5046900.023.66499955-59
GTCGCCG5153400.023.11800855-59
TGGTCGC5281800.022.90734150-54
CGTATCA5202500.022.75988660-64
GTGGTCG5413550.022.38640650-54
CCGTATC5158250.021.95053355-59
GGTCGCC5386600.021.28719350-54
TCTCGGT5787100.020.84994345-49
GCGTCGT5778450.020.76412810-14