FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921695_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921695_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153372033
Sequences flagged as poor quality0
Sequence length20-101
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC652.3127232E-433.2516941
CCGATCT755.3499255E-428.8190082
CCTAGTT950.002124404322.751161
GGAGCTC1650.001031279218.20114594-95
CCATTGG1450.001159034317.8871171
CCATTGT2401.3749614E-414.4090661
CTCGTAT5803.864625E-812.08179494-95
GCCCTTT1300.004105001711.63063212-13
GAGCTCG4152.910383E-911.61527488-89
CAGGTCG3050.001039120311.3382821
GTCTTCT7004.5100023E-810.72567694-95
AGAGCTC3853.1312826E-510.40065494-95
GCTCGTA4405.1977637E-510.23814594-95
CTATAAG9404.9112714E-119.6571411
CTGGTGA5904.108999E-69.5246381
CCGTCTT6351.793018E-59.45886294-95
GTATGCC9554.7361027E-88.90998594-95
AGCTCGT4906.114288E-58.52241992-93
GCCGTCT6304.471074E-47.94494494-95
CTGTGAA9202.3431694E-67.51777461