FastQCFastQC Report
Sat 20 Feb 2016
P4107_1005_S5_L006_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1005_S5_L006_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484233426
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC22509530.464848744250051Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG4876200.071.692369
GAGCGTC5211600.067.0865558
ATCGGAA5643650.063.375291
AGAGCGT5616750.062.404317
TCGGAAG5824700.061.1266372
CGGAAGA6058550.058.608743
AAGAGCG6237700.056.6605456
GAAGAGC9450800.037.7318155
GGAAGAG13460600.026.8752754
CGCCGTA3474300.020.76484555-59
TCGCCGT3569450.020.19588555-59
GCCGTAT3675800.019.65259755-59
GTCGCCG3895550.018.84179755-59
CGTATCA3841500.018.6370660-64
TGGTCGC4000850.018.491250-54
CCGTATC3787900.018.0813455-59
GTGGTCG4177000.017.79090550-54
GGTCGCC4144700.017.01528250-54
TCTCGGT4667200.016.12200745-49
GCGTCGT4677300.015.61187710-14