Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_1wk_SRR921768_1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 99937484 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 21 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCTCTT | 145 | 0.0 | 84.87177 | 2 |
ACGCTCT | 140 | 0.0 | 84.65724 | 1 |
CTCTTCC | 160 | 0.0 | 76.90081 | 4 |
TCTTCCG | 170 | 0.0 | 72.37723 | 5 |
GCTCTTC | 175 | 0.0 | 70.30927 | 3 |
CCTAATT | 30 | 1.595694E-4 | 60.779556 | 1 |
CTTCCGA | 220 | 0.0 | 55.927856 | 6 |
CCATTGG | 35 | 3.4175953E-4 | 52.096764 | 1 |
CGGCCGT | 15 | 0.008966435 | 49.230095 | 86-87 |
CCGATCT | 385 | 0.0 | 43.803467 | 2 |
TCCGATC | 385 | 0.0 | 42.624626 | 1 |
CCGATGT | 50 | 0.001978555 | 36.467735 | 1 |
TTCCGAT | 350 | 0.0 | 36.456676 | 7 |
CGATCTG | 125 | 8.485586E-9 | 32.810993 | 3 |
CTCTATT | 60 | 0.00483435 | 30.389778 | 1 |
CGATCTA | 185 | 4.7111826E-10 | 27.096167 | 3 |
CGATCTT | 355 | 0.0 | 23.106333 | 3 |
CATTTGC | 120 | 0.006046425 | 18.99361 | 1 |
CTCGGTT | 205 | 0.008169255 | 13.341854 | 1 |
CACATAT | 260 | 0.0027457627 | 12.272797 | 1 |