Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_1wk_SRR921769_1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20400069 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 21 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCTTCC | 15 | 7.843908E-4 | 91.02857 | 4 |
GCTCTTC | 15 | 7.843908E-4 | 91.02857 | 3 |
TCTTCCG | 15 | 7.843908E-4 | 91.02857 | 5 |
ACGCTCT | 20 | 0.0024543675 | 68.29269 | 1 |
CGCTCTT | 20 | 0.002457399 | 68.27143 | 2 |
CTTCCGA | 20 | 0.002457399 | 68.27143 | 6 |
TCCGATC | 45 | 1.9493466E-5 | 50.587173 | 1 |
CCGATCT | 45 | 1.9529398E-5 | 50.571426 | 2 |
CTAGGTA | 175 | 0.0028812923 | 15.609757 | 1 |
CAAATTG | 215 | 6.6115946E-4 | 14.823218 | 1 |
CAGGAGT | 215 | 6.6115946E-4 | 14.823218 | 1 |
CTGTAAT | 195 | 0.0059151743 | 14.008756 | 1 |
CAAATAG | 260 | 0.002771147 | 12.257662 | 1 |
CTTAAAT | 395 | 0.0057774154 | 9.220953 | 1 |
CTGATTT | 405 | 0.007094839 | 8.993276 | 1 |
CAAATAT | 685 | 1.4118794E-5 | 8.640437 | 1 |
CATAGAA | 490 | 0.003553419 | 8.36237 | 1 |
CAGTGTT | 525 | 0.0066100294 | 7.8048787 | 1 |
CTTTTGT | 825 | 1.7188198E-5 | 7.726041 | 1 |
CATTGAT | 545 | 0.009234184 | 7.518461 | 1 |