FastQCFastQC Report
Sat 20 Feb 2016
P4107_1006_S6_L007_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1006_S6_L007_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453238610
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC17701730.390560945370475Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG4042200.067.8191769
GAGCGTC4364200.062.931288
ATCGGAA4761300.058.617651
AGAGCGT4765300.057.7601667
TCGGAAG4926100.056.5785562
CGGAAGA5154250.053.9552463
AAGAGCG5346500.051.8450166
GAAGAGC8322850.033.6367955
GGAAGAG12061050.023.5548154
CGCCGTA2848450.020.23447455-59
TCGCCGT2943250.019.53051855-59
GCCGTAT3038950.019.01949155-59
GTCGCCG3237650.018.23737555-59
CGTATCA3205100.017.90584260-64
TGGTCGC3353150.017.7511350-54
GTGGTCG3521500.016.98321550-54
CCGTATC3136850.016.90331355-59
GGTCGCC3481100.015.81120350-54
GCGTCGT3864750.015.31076410-14
TCTCGGT3966050.015.27008145-49