Alignment
Sequences analysed in total |
153372033 |
Single-end alignments with a unique best hit |
120235451 |
Sequences without alignments under any condition |
12132257 |
Sequences that did not map uniquely |
21004325 |
Genomic sequence context not extractable (edges of chromosomes) |
10 |
Cytosine Methylation
Total C's analysed |
2052042902 |
Methylated C's in CpG context |
88328643 |
Methylated C's in CHG context |
4983440 |
Methylated C's in CHH context |
16036856 |
Methylated C's in Unknown context |
4 |
Unmethylated C's in CpG context |
27349290 |
Unmethylated C's in CHG context |
528630157 |
Unmethylated C's in CHH context |
1386714516 |
Unmethylated C's in Unknown context |
249 |
Percentage methylation (CpG context) |
76.4% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
60833866 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
59401575 |
original bottom strand |
Deduplication
Alignments analysed |
120235441 |
Unique alignments |
111849677 |
Duplicates removed |
8385764 |
Duplicated alignments were found at 3457979 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1930076424 |
Methylated C's in CpG context |
74520126 |
Methylated C's in CHG context |
4738195 |
Methylated C's in CHH context |
14929689 |
Unmethylated C's in CpG context |
23854898 |
Unmethylated C's in CHG context |
500496609 |
Unmethylated C's in CHH context |
1311536907 |
Percentage methylation (CpG context) |
75.8% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
M-Bias Plot