Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_2wk_SRR921694_1_trimmed.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 153092768 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-101 |
%GC | 26 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTCCGA | 140 | 4.2366082E-8 | 27.812872 | 1 |
CCGATCT | 160 | 1.5578735E-7 | 24.31425 | 4 |
TCCGATC | 165 | 2.0782863E-7 | 23.59948 | 3 |
TGGCCCC | 100 | 0.0028623007 | 21.612677 | 5 |
GGCCCCT | 125 | 4.2769872E-4 | 20.74379 | 6 |
GCCCCTG | 105 | 0.0038019323 | 20.579897 | 7 |
CCATATA | 155 | 8.025564E-5 | 19.538792 | 1 |
CTTAGTC | 160 | 0.0022271068 | 16.224174 | 1 |
ACCATTT | 255 | 2.2834445E-4 | 13.573167 | 1 |
TTCCGAT | 340 | 1.4125308E-5 | 12.72496 | 2 |
CCGTCTT | 590 | 3.9963197E-9 | 12.63515 | 94-95 |
GCCGTCT | 610 | 1.0186341E-10 | 10.798599 | 92-93 |
CTGATGG | 550 | 1.836968E-5 | 9.43952 | 1 |
CTGGTGT | 970 | 8.749339E-10 | 8.920508 | 1 |
GCTCGTA | 440 | 1.6462005E-5 | 8.535864 | 86-87 |
CAAACAA | 465 | 0.0035102456 | 8.373767 | 1 |
CTGGAGT | 1370 | 1.8189894E-12 | 8.210774 | 1 |
CCATTTT | 585 | 3.6849518E-4 | 8.135199 | 1 |
TGCCGTC | 640 | 2.520159E-6 | 8.125591 | 92-93 |
CCATATT | 480 | 0.00467362 | 8.112087 | 1 |