Basic Statistics
Measure | Value |
---|---|
Filename | MethylC-Seq_mm_fc_1wk_SRR921769_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20413156 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 21 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCTTCC | 35 | 3.869718E-8 | 80.565765 | 4 |
GCTCTTC | 35 | 3.869718E-8 | 80.565765 | 3 |
TCTTCCG | 40 | 9.763244E-8 | 70.49504 | 5 |
ACGCTCT | 35 | 3.6356523E-6 | 67.1587 | 1 |
CGCTCTT | 35 | 3.642268E-6 | 67.13814 | 2 |
CTTCCGA | 45 | 2.2060885E-7 | 62.662262 | 6 |
GCACACT | 40 | 5.679634E-4 | 46.998882 | 94 |
TCCGATC | 50 | 3.0124636E-5 | 46.996696 | 8 |
CCGATCT | 50 | 3.0124636E-5 | 46.996696 | 9 |
TTCCGAT | 75 | 7.453318E-6 | 37.59736 | 7 |
GTTACAC | 100 | 2.996476E-4 | 16.449287 | 92-93 |
CATGTCT | 400 | 1.4696343E-7 | 14.099665 | 94 |
TCAGTCA | 135 | 1.8376182E-4 | 13.925323 | 92-93 |
CAAAGGT | 205 | 0.0066626742 | 13.759343 | 1 |
TCCAGTT | 130 | 0.002183775 | 12.65308 | 88-89 |
CTTCAGT | 135 | 0.0028985362 | 12.184418 | 90-91 |
TGATCTC | 1575 | 0.0 | 11.637818 | 94 |
TATGCCG | 1160 | 0.0 | 10.939396 | 94 |
CTTGTAA | 305 | 0.0071803513 | 10.789431 | 1 |
TGTCTGA | 440 | 8.446793E-5 | 10.681564 | 94 |