Basic Statistics
Measure | Value |
---|---|
Filename | P4107_1003_S3_L004_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 431379000 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG | 3319382 | 0.7694815927525448 | TruSeq Adapter, Index 7 (97% over 37bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 563185 | 0.0 | 101.64445 | 1 |
TCGGAAG | 582440 | 0.0 | 98.216225 | 2 |
CGGAAGA | 604805 | 0.0 | 94.514786 | 3 |
AGAGCAC | 844835 | 0.0 | 67.72876 | 7 |
AGCACAC | 876540 | 0.0 | 65.22083 | 9 |
GAGCACA | 891875 | 0.0 | 64.14355 | 8 |
GAAGAGC | 909615 | 0.0 | 63.08774 | 5 |
AAGAGCA | 1130580 | 0.0 | 50.86499 | 6 |
GGAAGAG | 1248070 | 0.0 | 46.27915 | 4 |
TATGCCG | 472040 | 0.0 | 25.545908 | 45-49 |
CTCGTAT | 431525 | 0.0 | 24.862864 | 40-44 |
CGTATGC | 483775 | 0.0 | 24.71226 | 45-49 |
TCTCGTA | 433155 | 0.0 | 24.69634 | 40-44 |
ATGCCGT | 494210 | 0.0 | 24.273788 | 45-49 |
GCCGTCT | 500610 | 0.0 | 23.660591 | 50-54 |
GTCACGA | 513970 | 0.0 | 23.49607 | 25-29 |
ATCTCGT | 455580 | 0.0 | 23.495985 | 40-44 |
ACGAGAT | 523260 | 0.0 | 23.084806 | 30-34 |
CGTCTTC | 522170 | 0.0 | 22.903011 | 50-54 |
TGCCGTC | 496405 | 0.0 | 22.844576 | 45-49 |