Alignment
Sequences analysed in total |
116247060 |
Single-end alignments with a unique best hit |
89616441 |
Sequences without alignments under any condition |
9698581 |
Sequences that did not map uniquely |
16932038 |
Genomic sequence context not extractable (edges of chromosomes) |
6 |
Cytosine Methylation
Total C's analysed |
1442198467 |
Methylated C's in CpG context |
60606273 |
Methylated C's in CHG context |
3485852 |
Methylated C's in CHH context |
11271838 |
Methylated C's in Unknown context |
12 |
Unmethylated C's in CpG context |
18830815 |
Unmethylated C's in CHG context |
367405979 |
Unmethylated C's in CHH context |
980597710 |
Unmethylated C's in Unknown context |
243 |
Percentage methylation (CpG context) |
76.3% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
45302673 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
44313762 |
original bottom strand |
Deduplication
Alignments analysed |
89616435 |
Unique alignments |
84134391 |
Duplicates removed |
5482044 |
Duplicated alignments were found at 2023343 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1366729142 |
Methylated C's in CpG context |
51721327 |
Methylated C's in CHG context |
3340228 |
Methylated C's in CHH context |
10598154 |
Unmethylated C's in CpG context |
16593466 |
Unmethylated C's in CHG context |
350489608 |
Unmethylated C's in CHH context |
933986359 |
Percentage methylation (CpG context) |
75.7% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
M-Bias Plot