FastQCFastQC Report
Tue 10 Nov 2015
MethylC-Seq_mm_fc_1wk_SRR921767_1_trimmed.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_1wk_SRR921767_1_trimmed.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99942367
Sequences flagged as poor quality0
Sequence length20-100
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACCCCC157.715995E-491.4062653
ACGCTCT1400.078.36341
CGCTCTT1400.078.348232
GCTCTTC1600.077.124043
CTCTTCC1600.074.267594
TCTTCCG1550.073.715695
ATGCTCT200.002415556768.567971
CCAAAGT200.002415556768.567971
AAACCCC200.002417412168.55472
CTTCCGA1700.067.205286
AGACTGC250.0058460654.854381
GACTTAC250.00585023954.844475
CTCAATA503.548516E-545.7119831
CCGATCT2950.041.8299872
TCCGATC3000.041.140781
CGATCTG1004.2628017E-836.5625043
CAAACTT550.003114711733.245081
TTCCGAT3450.033.1156437
CGATCTA1701.6331614E-724.1957763
TGATCTC3601.2166358E-519.12345794