FastQCFastQC Report
Mon 9 Nov 2015
MethylC-Seq_mm_fc_2wk_SRR921696_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMethylC-Seq_mm_fc_2wk_SRR921696_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125723135
Sequences flagged as poor quality0
Sequence length101
%GC26

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCTGT32250.024.87347294-95
TGCCGTT270300.021.48509894-95
CTTCCGA1250.006051514318.990851
GCTCGTT167650.018.17652594-95
TATGCCT56200.017.69404494-95
TGCCGGT9900.017.26023594-95
CCTCGTA1852.7775968E-916.67832290-91
TCCGCTT1154.3034655E-516.5097994-95
CGTCTTT352650.016.4073894-95
AGAGCTG48000.016.2174394-95
GCCCGTT3400.016.05455894-95
GAGCTCT109500.015.93025294-95
TGCCCGT1401.3491897E-515.25681594-95
TCCGGCT3000.015.03078894-95
TTCCGTT46450.013.8973794-95
AAGAGCC17400.013.63955394-95
ATTCCCT3005.2750693E-1113.44860194-95
TTTGCCT17800.013.33304794-95
CCGGCTT13350.013.33304694-95
TCTTCTT120200.013.09056894-95