Alignment
Sequences analysed in total |
153092768 |
Single-end alignments with a unique best hit |
120059544 |
Sequences without alignments under any condition |
12078510 |
Sequences that did not map uniquely |
20954714 |
Genomic sequence context not extractable (edges of chromosomes) |
19 |
Cytosine Methylation
Total C's analysed |
2050033670 |
Methylated C's in CpG context |
88264379 |
Methylated C's in CHG context |
4976648 |
Methylated C's in CHH context |
16015321 |
Methylated C's in Unknown context |
7 |
Unmethylated C's in CpG context |
27338288 |
Unmethylated C's in CHG context |
528140316 |
Unmethylated C's in CHH context |
1385298718 |
Unmethylated C's in Unknown context |
240 |
Percentage methylation (CpG context) |
76.4% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
Methylated C's in Unknown context |
N/A% |
Alignment to Individual Bisulfite Strands
OT |
60747577 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
59311948 |
original bottom strand |
Deduplication
Alignments analysed |
120059525 |
Unique alignments |
111688896 |
Duplicates removed |
8370629 |
Duplicated alignments were found at 3449037 different positions |
Cytosine Methylation after Extraction
Total C's analysed |
1928202931 |
Methylated C's in CpG context |
74456543 |
Methylated C's in CHG context |
4731636 |
Methylated C's in CHH context |
14906573 |
Unmethylated C's in CpG context |
23848801 |
Unmethylated C's in CHG context |
500040303 |
Unmethylated C's in CHH context |
1310219075 |
Percentage methylation (CpG context) |
75.7% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.1% |
M-Bias Plot