FastQCFastQC Report
Sat 20 Feb 2016
P4107_1001_S1_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP4107_1001_S1_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383592756
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG36919590.9624683840484203TruSeq Adapter, Index 6 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCCCGTATG4098060.10683361288501496TruSeq Adapter, Index 6 (97% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA6120050.0114.54951
TCGGAAG6597900.0105.788332
CGGAAGA6796100.0102.613743
AGAGCAC8938700.078.093247
AGCACAC9206950.075.773099
GAGCACA9346800.074.690518
GAAGAGC9455350.073.938645
AAGAGCA11442550.061.22346
GGAAGAG12415100.056.5776064
TATGCCG5519250.026.19275745-49
CTCGTAT4942100.025.66996240-44
TCTCGTA4951550.025.53434440-44
CGTATGC5631300.025.49657445-49
ATGCCGT5691800.025.21537845-49
GCCGTCT5737200.024.70019550-54
ATCTCGT5146250.024.6085640-44
CCGTCTT5912550.024.14537850-54
TGCCGTC5711400.024.104745-49
CGTCTTC5923750.024.10143950-54
TCGTATG5063100.023.94398340-44