|
def | __init__ (self, sampling_frequency) |
|
def | SDNN (self, rr_samples, normalise=False) |
|
def | SDANN (self, rr_samples, average_period=5.0, normalise=False) |
|
def | RMSSD (self, rr_samples, normalise=False) |
|
def | SDSD (self, rr_samples) |
|
def | NN50 (self, rr_samples) |
|
def | pNN50 (self, rr_samples) |
|
def | NN20 (self, rr_samples) |
|
def | pNN20 (self, rr_samples) |
|
def | HR (self, rr_samples) |
|
def | add_rr_error (self, rr_samples, error) |
|
def | fAnalysis (self, rr_samples) |
|
|
| fs |
|
| period |
|
| hr_discrete |
|
| t_hr_discrete |
|
| hr_func |
|
| t_hr_linear |
|
| hr_linear |
|
| f_hr |
|
| f_hr_axis |
|
| lf |
|
| hf |
|
Heartrate variability class which calcualtes the standard HRV
parameters with the help of Python functions and for cross
validation also via the physionet's get_hrv script.
◆ __init__()
def hrv.HRV.__init__ |
( |
|
self, |
|
|
|
sampling_frequency |
|
) |
| |
Constructor takes the sampling frequency.
All rr_sample data is in sample number and
will assume it's at this sampling rate.
◆ add_rr_error()
def hrv.HRV.add_rr_error |
( |
|
self, |
|
|
|
rr_samples, |
|
|
|
error |
|
) |
| |
Adds jitter to the heartrate timestamps.
The error and the rr_samples are in timestamps.
Returns the noisy timestamps in samples.
◆ fAnalysis()
def hrv.HRV.fAnalysis |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Frequency analysis to calc self.lf, self.hf, returns the LF/HF-ratio and
also calculates the spectrum as pairs of (self.f_hr_axis,self.f_hr).
The input arrary is in sample points where R peaks have been detected.
◆ HR()
def hrv.HRV.HR |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Calculate heart-rates from R peak samples.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: Heart-rates in BPM
:rtype: ndarray
◆ NN20()
def hrv.HRV.NN20 |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Calculate NN20, the number of pairs of successive NNs that differ by more than 20 ms.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: NN20
:rtype: float
◆ NN50()
def hrv.HRV.NN50 |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Calculate NN50, the number of pairs of successive NNs that differ by more than 50 ms.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: NN50
:rtype: float
◆ pNN20()
def hrv.HRV.pNN20 |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Calculate pNN20, the proportion of NN20 divided by total number of NNs.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: pNN20
:rtype: float
◆ pNN50()
def hrv.HRV.pNN50 |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Calculate pNN50, the proportion of NN50 divided by total number of NNs.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: pNN50
:rtype: float
◆ RMSSD()
def hrv.HRV.RMSSD |
( |
|
self, |
|
|
|
rr_samples, |
|
|
|
normalise = False |
|
) |
| |
Calculate RMSSD (root mean square of successive differences).
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:param normalise: normalise the RMSSD against the average RR interval, defaults to False
:type normalise: bool, optional
:return: RMSSD (root mean square of successive differences)
:rtype: float
◆ SDANN()
def hrv.HRV.SDANN |
( |
|
self, |
|
|
|
rr_samples, |
|
|
|
average_period = 5.0 , |
|
|
|
normalise = False |
|
) |
| |
Calculate SDANN, the standard deviation of the average RR intervals calculated over short periods.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:param average_period: The averging period in minutes, defaults to 5.0
:type average_period: float, optional
:param normalise: normalise the SDANN against the average RR interval, defaults to False
:type normalise: bool, optional
:return: SDANN, the standard deviation of the average RR intervals calculated over short periods
:rtype: float
◆ SDNN()
def hrv.HRV.SDNN |
( |
|
self, |
|
|
|
rr_samples, |
|
|
|
normalise = False |
|
) |
| |
Calculate SDNN, the standard deviation of NN intervals.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:param normalise: normalise the SDNN against the average RR interval, defaults to False
:type normalise: bool, optional
:return: SDNN, the standard deviation of NN intervals
:rtype: float
◆ SDSD()
def hrv.HRV.SDSD |
( |
|
self, |
|
|
|
rr_samples |
|
) |
| |
Calculate SDSD (standard deviation of successive differences), the standard deviation of the successive differences between adjacent NNs.
:param rr_samples: R peak sample locations
:type rr_samples: array_like
:return: SDSD (standard deviation of successive differences)
:rtype: float
The documentation for this class was generated from the following file: