{% macro gt_call(case_id, individuals) -%}
Case | Sample | Genotype (GT) | Allele depth (AD) | Quality (GQ) | |
---|---|---|---|---|---|
Ref | Alt | ||||
{{ case_id }} | {% if individual.is_affected %} {{ individual.sample_id }} {% else %} {{ individual.sample_id }} {% endif %} | {{ individual.genotype }} | {{ individual.ref_depth }} | {{ individual.alt_depth }} | {{ individual.genotype_quality }} |
Case | Sample | Genotype (GT) | Support (SU) | |
---|---|---|---|---|
PE | SR | |||
{{ case_id }} | {% if individual.is_affected %} {{ individual.sample_id }} {% else %} {{ individual.sample_id }} {% endif %} | {{ individual.genotype }} | {{ individual.pe_support }} | {{ individual.sr_support }} |