{% from "bootstrap.html" import css, custom_css %} Clinical Genomics Report - {{ family_id }} {{ css() }} {{ custom_css() }}

Leveransrapport Clinical Genomics

Kontakt Clinical Genomics

Clinical Genomics
Science for Life Laboratory
Tomtebodavägen 23
171 65 Solna
P: (08) 524 81 500

Kundinformation

{{ customer.invoice_address|replace('\n', '
')|safe }}
{% if accredited %}
SWEDAC logo
{% endif %}
{% for sample in samples %} {% endfor %}
Prov Familj Kön Status Genpanel(er) Vävnad Ticket Analys
{{ sample.name }} ({{ sample.id }}) {{ family_id }} {{ sample.sex }} ( analys: {% if sample.sex != sample.sex_predicted %} {{ sample.sex_predicted }} {% else %} {{ sample.sex_predicted }} {% endif %}) {{ sample.status }} {{ gene_panels|join(', ') }} {{ sample.source }} {{ sample.project }} {{ sample.app_tag }}
{% for sample in samples %} {% endfor %}
Prov Ankomstdatum Biblioteksberedning Sekvensering Analys Svarsdatum
{{ sample.name }} {{ sample.received_at.date() }} {{ sample.library_prep_method or "N/A" }} {{ sample.sequencing_method or "N/A" }} {{ sample.delivery_method or "N/A" }} {{ sample.delivery_date.date() if sample.delivery_date }} {% if sample.processing_time %} ({{ sample.processing_time }} dagar) {% endif %}
Familj MIP-version Genpaneler Genomversion
{{ family_id }} {{ pipeline_version }} {{ gene_panels|join(', ') }} {{ reference_genome }}
{% for sample in samples %} {% endfor %}
Resultat baserade på prob-regioner för riktade analyser såsom "EXO*" och "EFT*".
Prov Läspar [M] Mappade sekvenser [%] Medelsekvensdjup Täckningsgrad 10x [%] Duplikat [%]
{{ sample.name }} {{ (sample.read_pairs / 1000000)|round(1) }} {{ sample.mapped|round(3) * 100 }} {{ sample.target_coverage|round(3) }} {{ sample.target_completeness|round(3) * 100 }} {{ (sample.duplicates * 100)|round(3) }}
{% if customer.scout_access %}

Varianter finns uppladdade i Scout: https://clinical-db.scilifelab.se:8083/{{ customer.customer_id }}/{{ family_id }}

{% endif %}
{% for apptagv in apptags %}

Teknisk beskrivning av analysen: {{ apptagv.apptag.name }}

{{ apptagv.description }}

{{ apptagv.limitations if apptagv.limitations }}

{% endfor %}

Signatur för godkännande av rapport

Valtteri Wirta
Head of unit, Clinical Genomics