iCallSV: Structural Aberration Detection from NGS datasets

Author:Ronak H Shah
Contact:rons.shah@gmail.com
Source code:http://github.com/rhshah/iCallSV
Wiki:http://icallsv.readthedocs.io/en/latest/
License:Apache License 2.0
Code Health https://zenodo.org/badge/DOI/10.5281/zenodo.184864.svg https://codecov.io/gh/rhshah/iCallSV/branch/master/graph/badge.svg

iCallSV is a Python library and command-line software toolkit to call structural aberrations from Next Generation DNA sequencing data. Behind the scenes it uses Delly2 to do structural variant calling. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina.

Citation

We are in the process of publishing a manuscript describing iCallSV as part of the Structural Variant Detection framework. If you use this software in a publication, for now, please cite our website iCallSV.

Contents:

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