{% from "bootstrap.html" import css, custom_css %}
Prov | Familj | Kön | Status | Genpanel(er) | Vävnad | Ticket | Analys |
---|---|---|---|---|---|---|---|
{{ sample.name }} ({{ sample.id }}) | {{ family_id }} | {{ sample.sex }} ( analys: {% if sample.sex != sample.sex_predicted %} {{ sample.sex_predicted }} {% else %} {{ sample.sex_predicted }} {% endif %}) | {{ sample.status }} | {{ gene_panels|join(', ') }} | {{ sample.source }} | {{ sample.project }} | {{ sample.app_tag }} |
Prov | Ankomstdatum | Biblioteksberedning | Sekvensering | Analys | Svarsdatum |
---|---|---|---|---|---|
{{ sample.name }} | {{ sample.received_at.date() }} | {{ sample.library_prep_method or "N/A" }} | {{ sample.sequencing_method or "N/A" }} | {{ sample.delivery_method or "N/A" }} | {{ sample.delivery_date.date() if sample.delivery_date }} {% if sample.processing_time %} ({{ sample.processing_time }} dagar) {% endif %} |
Familj | MIP-version | Genpaneler | Genomversion |
---|---|---|---|
{{ family_id }} | {{ pipeline_version }} | {{ gene_panels|join(', ') }} | {{ reference_genome }} |
Prov | Läspar [M] | Mappade sekvenser [%] | Medelsekvensdjup | Täckningsgrad 10x [%] | Duplikat [%] |
---|---|---|---|---|---|
{{ sample.name }} | {{ (sample.read_pairs / 1000000)|round(1) }} | {{ sample.mapped|round(3) * 100 }} | {{ sample.target_coverage|round(3) }} | {{ sample.target_completeness|round(3) * 100 }} | {{ (sample.duplicates * 100)|round(3) }} |
Varianter finns uppladdade i Scout: https://clinical-db.scilifelab.se:8083/{{ customer.customer_id }}/{{ family_id }}
{% endif %}{{ apptagv.description }}
{{ apptagv.limitations if apptagv.limitations }}
Valtteri Wirta
Head of unit, Clinical Genomics