Unrestricted Search Tutorial
MS2DB is a relatively straightforward file format. For now, the documentation is limited to
a example.
TODO: Document all available tags and attributes.
Abbreviated example
<Database>
<Gene ExonCount="14" Chromosome="chr1" ForwardFlag="1" Name="At1g02100">
<Exon Index="0" Start="389875" End="389943">
<ExonSequence Length="22">MAESRSNRAAVQATNDDASASK</ExonSequence>
</Exon>
<Exon Index="1" Start="390036" End="390250">
<ExonSequence Length="71">SCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFSRWAAFRKLMSQFLLSGTSSKKQILSLGAGFDTTYFQLL</ExonSequence>
<LinkFrom Index="0" AA="L" />
</Exon>
[.......]
<Exon Index="12" Start="392261" End="392300">
<ExonSequence Length="13">EHYCVTYAVNDAM</ExonSequence>
<LinkFrom Index="9" />
</Exon>
<Exon Index="13" Start="392373" End="392448">
<ExonSequence Length="25">GIFGDFGFTREGGGERMSSSASSPX</ExonSequence>
<LinkFrom Index="12" />
</Exon>
<CrossReference Database"Salk" ID="At1g02100.1">
<CRExons Index="0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13 />
</CrossReference>
<CrossReference Database"Salk" ID="At1g02100.2">
<CRExons Index="0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 />
</CrossReference>
</Gene>
</Database>