VRProt
Usage
VRProt
VRProt
Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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U
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V
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W
A
add_protein_structure_from_scales() (in module vrprot.overview_util)
alphafold_ver (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
AlphafoldDBParser (class in vrprot.alphafold_db_parser)
argument_parser() (in module vrprot.argument_parser)
B
batch() (in module vrprot.batcher)
(in module vrprot.util)
batch_size (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
C
call_ChimeraX_bundle() (in module vrprot.util)
check_dirs() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
chimerax (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
chimerax_process() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
ChimeraXException
clear_default_dirs() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
combine_fractions() (in module vrprot.util)
convert_glb_to_ply() (in module vrprot.util)
convert_glbs() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
D
db (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
E
execute_fetch() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
execute_from_bulk() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
execute_from_object() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
execute_local() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
F
fetch_pdb() (in module vrprot.util)
(vrprot.alphafold_db_parser.AlphafoldDBParser method)
fetch_pdb_from_alphafold() (in module vrprot.util)
fetch_pdb_from_rcsb() (in module vrprot.util)
fetch_pipeline() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
filter_already_processed() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
G
gen_filennames() (in module vrprot.pointcloud2map_8bit)
gen_maps() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
get_filename() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
get_overview() (in module vrprot.overview_util)
get_scale() (in module vrprot.overview_util)
I
img_size (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
init_dirs() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
init_overview() (in module vrprot.overview_util)
init_structures_dict() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
K
keep_temp (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
L
log (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
M
main() (in module vrprot.overview_util)
module
vrprot
vrprot.alphafold_db_parser
vrprot.argument_parser
vrprot.batcher
vrprot.exceptions
vrprot.overview_util
vrprot.pointcloud2map_8bit
vrprot.sample_pointcloud
vrprot.util
N
not_fetched (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
O
output_exists() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
overview_file (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
overwrite (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
P
pcd_to_png() (in module vrprot.pointcloud2map_8bit)
pdb_pipeline() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
processing (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
proteins_from_dir() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
proteins_from_list() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
R
read_overview() (in module vrprot.overview_util)
remove_dirs() (in module vrprot.util)
run_batch() (in module vrprot.pointcloud2map_8bit)
run_chimerax_coloring_script() (in module vrprot.util)
run_for_batch() (in module vrprot.sample_pointcloud)
S
sample_pcd() (in module vrprot.sample_pointcloud)
(vrprot.alphafold_db_parser.AlphafoldDBParser method)
search_for_chimerax() (in module vrprot.util)
set_alphafold_version() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_batch_size() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_chimerax() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_coloring_mode() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_database() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_dirs() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_img_size() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_keep_tmp() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
set_version_from_filenames() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
StructureNotFoundError
structures (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
U
update_existence() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
update_output_dir() (vrprot.alphafold_db_parser.AlphafoldDBParser method)
V
vrprot
module
vrprot.alphafold_db_parser
module
vrprot.argument_parser
module
vrprot.batcher
module
vrprot.exceptions
module
vrprot.overview_util
module
vrprot.pointcloud2map_8bit
module
vrprot.sample_pointcloud
module
vrprot.util
module
W
WD (vrprot.alphafold_db_parser.AlphafoldDBParser attribute)
write_overview() (in module vrprot.overview_util)
write_scale() (in module vrprot.overview_util)
(vrprot.alphafold_db_parser.AlphafoldDBParser method)