findCPcore
1. findCPcore
2. FacadeUtils
findCPcore
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Welcome to findCPcore’s documentation!
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Welcome to findCPcore’s documentation!
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1. findCPcore
Import core modules
Read metabolic model
Get model info
Model info
Metabolites
Reactions
Genes
Dead-end metabolites
Finding Dead-end metabolites
Removing dead-end metabolites
Dead reactions
Finding Dead reactions
Chokepoint reactions
Finding chokepoint reactions
Flux Balance Analysis
Flux Variability Analysis
Updating reaction’s flux with FVA
Essential genes
Finding essential genes
Essential reactions
Finding essential reactions
Essential genes reactions
Finding essential genes reactions
2. FacadeUtils
Import FacadeUtils modules
Generate chokepoint summary spreadsheet
Generate chokepoint growth sensibility spreadsheet