findCPcore
  • 1. findCPcore
  • 2. FacadeUtils
findCPcore
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  • Welcome to findCPcore’s documentation!
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Welcome to findCPcore’s documentation!¶

  • 1. findCPcore
    • Import core modules
    • Read metabolic model
    • Get model info
      • Model info
      • Metabolites
      • Reactions
      • Genes
    • Dead-end metabolites
      • Finding Dead-end metabolites
      • Removing dead-end metabolites
    • Dead reactions
      • Finding Dead reactions
    • Chokepoint reactions
      • Finding chokepoint reactions
    • Flux Balance Analysis
    • Flux Variability Analysis
      • Updating reaction’s flux with FVA
    • Essential genes
      • Finding essential genes
    • Essential reactions
      • Finding essential reactions
    • Essential genes reactions
      • Finding essential genes reactions
  • 2. FacadeUtils
    • Import FacadeUtils modules
    • Generate chokepoint summary spreadsheet
    • Generate chokepoint growth sensibility spreadsheet
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