ACDC 2019 Naturalist
Analysis 28 : Details
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Results: main figures Previous analysis Back to global report Next analysis

Study type: Point transect, Radial distance, No clustering.

Units used: Meter for distances, Sq. Kilometer for areas.

Note: Most figures have been rounded for readability, but 'CoefVar Density' have been further modified : converted to %

Echant Espèce Passage Adulte Durée NTot Obs Max Dist Analyse Mod Key Fn Mod Adj Ser Left Trunc Dist Right Trunc Dist Fit Dist Cuts ExCod Effort NObs Obs Rate NumPars AdjSer Delta AIC Chi2 P KS P CvM Uw P CvM Cw P CoefVar Density Qual Bal 3 Qual Bal 2 Qual Bal 1 Qual Chi2+ Qual KS+ Qual DCv+ Density Min Density Max Density Number Min Number Max Number EDR/ESW Min EDR/ESW Max EDR/ESW PDetec Min PDetec Max PDetec RunFolder
28 1 Sylvia atricapilla a+b m 10mn 403 511.41 49 HAZARD POLY 5 492 13 1 190 401 99.5 0 0 0.25 0.55 0.6 0.7 10 0.65 0.64 0.65 0.58 0.64 0.67 37.58 30.87 45.75 902 741 1098 133.7 124.4 143.6 0.074 0.064 0.085 SylvAtri-ab-10mn-m-haz-pol-la-ra-ma-90vq_6nr
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Results: all details Previous analysis Back to global report Next analysis

Study type: Point transect, Radial distance, No clustering.

Units used: Meter for distances, Sq. Kilometer for areas.

Note: All values have been left untouched, as output by MCDS (no rounding, no conversion)

Analyse Echant Espèce Passage Adulte Durée FonctionClé SérieAjust TrGche TrDrte NbTrchMod Abrev. Analyse OptimTrunc NTot Obs Min Dist Max Dist Mod Key Fn Mod Adj Ser Mod Chc Crit Conf Interv Left Trunc Dist Right Trunc Dist Fit Dist Cuts ExCod StartTime ElapsedTime RunFolder NObs NSamp Effort EncRate CoefVar EncRate Min EncRate Max EncRate DoF EncRate Left Trunc Right Trunc Obs Rate TotNum Pars Delta AIC AIC Chi2 P Chi2 P 1 Chi2 P 2 Chi2 P 3 f/h(0) CoefVar f/h(0) Min f/h(0) Max f/h(0) DoF f/h(0) PDetec CoefVar PDetec Min PDetec Max PDetec DoF PDetec EDR/ESW CoefVar EDR/ESW Min EDR/ESW Max EDR/ESW DoF EDR/ESW AICc BIC LogLhood KS P CvM Uw P CvM Cw P Key Fn Adj Ser NumPars KeyFn NumPars AdjSer Num Covars EstA(1) EstA(2) EstA(3) DensClu CoefVar DensClu Min DensClu Max DensClu DoF DensClu Density Delta CoefVar Density CoefVar Density Min Density Max Density DoF Density Number CoefVar Number Min Number Max Number DoF Number Qual Bal 1 Qual Bal 2 Qual Bal 3 Qual Chi2+ Qual KS+ Qual DCv+ Group Left Trunc Group Right Trunc Order Same Trunc AIC Order Close Trunc Chi2 KS DCv Order Close Trunc DCv Order Close Trunc Bal 1 Qual Order Close Trunc Bal 2 Qual Order Close Trunc Bal 3 Qual Order Close Trunc Bal Chi2+ Qual Order Close Trunc Bal KS+ Qual Order Close Trunc Bal DCv+ Qual Order Global Chi2 KS DCv Order Global Bal 1 Qual Order Global Bal 2 Qual Order Global Bal 3 Qual Order Global Bal Chi2+ Qual Order Global Bal KS+ Qual Order Global Bal DCv+ Qual Order Global DeltaAIC Chi2 KS DCv
28 49 1 Sylvia atricapilla a+b m 10mn HAZARD POLY 4.553960 492.328316 13.000000 SylvAtri-ab-10mn-m-haz-pol-la-ra-ma 1 403 1.212094 511.409745 HAZARD POLY AIC 95 4.553960 492.328316 13.000000 1 2023-04-30 15:55:03.377000 1.300000 SylvAtri-ab-10mn-m-haz-pol-la-ra-ma-90vq_6nr 401 96 190 2.110526 0.068677 1.841824 2.418429 95 4.553960 492.328000 99.503722 2.000000 0.000000 4488.174000 0.250081 0.250081 nan nan 0.000112 0.073005 0.000097 0.000129 399.000000 0.073743 0.073005 0.063896 0.085108 399.000000 133.695000 0.036502 124.440000 143.638200 399.000000 4488.205000 4496.162000 -2242.087000 0.550075 0.600000 0.700000 HAZARD POLY 2.000000 0.000000 0.000000 99.033550 3.760158 nan 37.584680 0.100231 30.874110 45.753800 330.520400 37.584680 0.000000 0.100231 30.874110 45.753800 330.520400 902 0.100231 741 1098 330.520400 0.653611 0.640192 0.648279 0.583173 0.636554 0.672710 1 4 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 13
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Summary computation log Previous analysis Back to global report Next analysis

This is mcds.exe version 6.2.0     
 Options;                                                                      
 Type=Point;                                                                   
 Distance=Radial /Measure='Meter';                                             
 Area /Units='Sq. Kilometer';                                                  
 Object=Single;                                                                
 SF=1;                                                                         
 Selection=Sequential;                                                         
 Lookahead=1;                                                                  
 Maxterms=5;                                                                   
 Confidence=95;                                                                
 print=Selection;                                                              
 End;                                                                          
 Data /Structure=Flat;                                                         
 Fields=STR_LABEL,STR_AREA,SMP_LABEL,SMP_EFFORT,DISTANCE;                      
 Infile=anlys\230430-153402\SylvAtri-ab-10mn-m-haz-pol-la-ra-ma-90vq_6nr\data.txt /NoEcho;                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
 Data will be input from file - [...]POL-LA-RA-MA-90VQ_6NR\DATA.TXT
 End;                                                                          
 Dataset has been stored.
 Estimate;                                                                     
 Distance /Left=4.55396 /Width=492.328;                                        
 Density=All;                                                                  
 Encounter=All;                                                                
 Detection=All;                                                                
 Size=All;                                                                     
 Estimator /Key=HAZARD /Adjust=POLY /Criterion=AIC;                            
 Monotone=Strict;                                                              
 Pick=AIC;                                                                     
 GOF /NClass=13;                                                               
 Cluster /Bias=GXLOG;                                                          
 VarN=Empirical;                                                               
 End;
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Detailed computation log

Estimation Options Listing Previous analysis Back to global report Next analysis

 Parameter Estimation Specification
 ----------------------------------
 Encounter rate for all data combined
 Detection probability for all data combined
 Density for all data combined

 Distances:
 ----------
 Analysis based on exact distances
 Width specified as:    492.3280    
 Left most value set at:    4.553960

 Estimators:
 -----------
 Estimator  1
 Key: Hazard Rate
 Adjustments - Function                 : Simple polynomials
             - Term selection mode      : Sequential
             - Term selection criterion : Akaike Information Criterion (AIC)
             - Distances scaled by      : W (right truncation distance)

 Estimator selection: Choose estimator with minimum  AIC
 Estimation functions: constrained to be nearly monotone non-increasing

 Variances:
 ----------
 Variance of n: Empirical estimate from sample
                (design-derived estimator R2/P2)
 Variance of f(0): MLE estimate

 Goodness of fit:
 ----------------
 Based on user defined cut points

 Glossary of terms
 -----------------

 Data items:
 n    - number of observed objects (single or clusters of animals)
 L    - total length of transect line(s) 
 k    - number of samples
 K    - point transect effort, typically K=k
 T    - length of time searched in cue counting
 ER   - encounter rate (n/L or n/K or n/T)
 W    - width of line transect or radius of point transect
 x(i) - distance to i-th observation
 s(i) - cluster size of i-th observation
 r-p  - probability for regression test
 chi-p- probability for chi-square goodness-of-fit test

 Parameters or functions of parameters:
 m    - number of parameters in the model
 A(I) - i-th parameter in the estimated probability density function(pdf)
 f(0) - 1/u = value of pdf at zero for line transects
 u    - W*p = ESW, effective detection area for line transects
 h(0) - 2*PI/v
 v    - PI*W*W*p, is the effective detection area for point transects
 p    - probability of observing an object in defined area
 ESW  - for line transects, effective strip width = W*p
 EDR  - for point transects, effective detection radius  = W*sqrt(p)
 rho  - for cue counts, the cue rate
 DS   - estimate of density of clusters
 E(S) - estimate of expected value of cluster size
 D    - estimate of density of animals
 N    - estimate of number of animals in specified area

        

Detection Fct/Global/Model Fitting Previous analysis Back to global report Next analysis

 Effort        :    190.0000    
 # samples     :    96
 Width         :    492.3280    
 Left          :    4.553960    
 # observations:   401

 Model  1
    Hazard Rate key, k(y) = 1 - Exp(-(y/A(1))**-A(2))
       Results:
       Convergence was achieved with   19 function evaluations.
       Final Ln(likelihood) value =  -2242.0870    
       Akaike information criterion =   4488.1743    
       Bayesian information criterion =   4496.1621    
       AICc =   4488.2046    
       Final parameter values:   99.033556      3.7601583

 Model  2
    Hazard Rate key, k(y) = 1 - Exp(-(y/A(1))**-A(2))
    Simple polynomial adjustments of order(s) :  4
       Results:
       Convergence was achieved with   15 function evaluations.
       Final Ln(likelihood) value =  -2241.4494    
       Akaike information criterion =   4488.8989    
       Bayesian information criterion =   4500.8809    
       AICc =   4488.9595    
       Final parameter values:   99.547349      3.6794809    -0.56949598

    Likelihood ratio test between models  1 and  2
       Likelihood ratio test value    =     1.2753
       Probability of a greater value =   0.258774
 *** Model  1 selected over model  2 based on minimum AIC              

        

Detection Fct/Global/Parameter Estimates Previous analysis Back to global report Next analysis

 Effort        :    190.0000    
 # samples     :    96
 Width         :    492.3280    
 Left          :    4.553960    
 # observations:   401

 Model
    Hazard Rate key, k(y) = 1 - Exp(-(y/A(1))**-A(2))

              Point        Standard    Percent Coef.        95 Percent
  Parameter   Estimate       Error      of Variation     Confidence Interval
  ---------  -----------  -----------  --------------  ----------------------
    A( 1)      99.03        5.275    
    A( 2)      3.760       0.2116    
    h(0)     0.11189E-03  0.81687E-05       7.30      0.96951E-04  0.12914E-03
    p        0.73743E-01  0.53836E-02       7.30      0.63896E-01  0.85108E-01
    EDR       133.69       4.8802           3.65       124.44       143.64    
  ---------  -----------  -----------  --------------  ----------------------

 Sampling Correlation of Estimated Parameters

         A( 1)   A( 2)
 A( 1)  1.000   0.762
 A( 2)  0.762   1.000

        

Detection Fct/Global/Plot: Qq-plot Previous analysis Back to global report Next analysis

Detection Fct/Global/K-S GOF Test Previous analysis Back to global report Next analysis

 Kolmogorov-Smirnov test
 -----------------------

 D_n                      = 0.0398                 p  = 0.5501

 Cramer-von Mises family tests
 -----------------------------

 W-sq (uniform weighting) = 0.1107          0.500 < p <= 0.600
   Relevant critical values:
     W-sq crit(alpha=0.600) = 0.0968
     W-sq crit(alpha=0.500) = 0.1187

 C-sq (cosine weighting)  = 0.0619          0.600 < p <= 0.700
   Relevant critical values:
     C-sq crit(alpha=0.700) = 0.0499
     C-sq crit(alpha=0.600) = 0.0622

        

Detection Fct/Global/Plot: Detection Probability 1 Previous analysis Back to global report Next analysis

Detection Fct/Global/Plot: Pdf 1 Previous analysis Back to global report Next analysis

Detection Fct/Global/Chi-sq GOF Test 1 Previous analysis Back to global report Next analysis

  Cell           Cut           Observed     Expected   Chi-square
   i            Points          Values       Values       Values
 -----------------------------------------------------------------
   1      4.55        42.1           42       39.25        0.192
   2      42.1        79.6           96      100.21        0.177
   3      79.6        117.          102      104.55        0.062
   4      117.        155.           61       61.01        0.000
   5      155.        192.           41       33.99        1.447
   6      192.        230.           22       20.35        0.134
   7      230.        267.           18       13.08        1.847
   8      267.        305.            6        8.91        0.952
   9      305.        342.            1        6.35        4.512
  10      342.        380.            6        4.70        0.361
  11      380.        417.            4        3.58        0.050
  12      417.        455.            0        2.79        2.791
  13      455.        492.            2        2.22        0.022
 -----------------------------------------------------------------
 Total Chi-square value =    12.5475  Degrees of Freedom = 10.00

Probability of a greater chi-square value, P = 0.25008

 The program has limited capability for pooling.  The user should
 judge the necessity for pooling and if necessary, do pooling by hand.

        

Density Estimates/Global Previous analysis Back to global report Next analysis

 Effort        :    190.0000    
 # samples     :    96
 Width         :    492.3280    
 Left          :    4.553960    
 # observations:   401

 Model  1
    Hazard Rate key, k(y) = 1 - Exp(-(y/A(1))**-A(2))

              Point        Standard    Percent Coef.        95% Percent
  Parameter   Estimate       Error      of Variation     Confidence Interval
  ---------  -----------  -----------  --------------  ----------------------
    D         37.585       3.7671          10.02       30.874       45.754    
    N         902.00       90.408          10.02       741.00       1098.0    
  ---------  -----------  -----------  --------------  ----------------------

 Measurement Units                
 ---------------------------------
 Density: Numbers/Sq. kilometers 
     EDR: meters

 Component Percentages of Var(D)
 -------------------------------
 Detection probability   :  53.1
 Encounter rate          :  46.9

        

Estimation Summary - Encounter rates Previous analysis Back to global report Next analysis

                         Estimate      %CV     df     95% Confidence Interval
                        ------------------------------------------------------
                 n       401.00    
                 k       96.000    
                 K       190.00    
                 n/K     2.1105        6.87    95.00  1.8418       2.4184    
                 Left    4.5540    
                 Width   492.33    

        

Estimation Summary - Detection probability Previous analysis Back to global report Next analysis

                         Estimate      %CV     df     95% Confidence Interval
                        ------------------------------------------------------
 Hazard/Polynomial      
                 m       2.0000    
                 LnL    -2242.1    
                 AIC     4488.2    
                 AICc    4488.2    
                 BIC     4496.2    
                 Chi-p  0.25008    
                 h(0)   0.11189E-03    7.30   399.00 0.96951E-04  0.12914E-03
                 p      0.73743E-01    7.30   399.00 0.63896E-01  0.85108E-01
                 EDR     133.69        3.65   399.00  124.44       143.64    

        

Estimation Summary - Density&Abundance Previous analysis Back to global report Next analysis

                         Estimate      %CV     df     95% Confidence Interval
                        ------------------------------------------------------
 Hazard/Polynomial      
                 D       37.585       10.02   330.52  30.874       45.754    
                 N       902.00       10.02   330.52  741.00       1098.0

        
Generated on 30/04/2023 17:29:56 with Python 3, NumPy 1.23.2, Pandas, ZOOpt 0.4.0, Matplotlib, Jinja 2 ... and AutoDS , with icons from Font Awesome (sources : acdc-2019-nat-ds-params.py, ) .