{% extends "base.html" %} {% block content %} {% if data['variants'] %}
{% for item in data['variants'] %} {% endfor %}
CHR GENE LOCUS PRODUCT TYPE EFFECT POS REF ALT BIOTYPE NUCLEOTIDE CONSEQUENCE IMPACT PATHWAY
{{ item[16] or "NA" }} {{ item[3] or "NA" }} {% if 'intergenic' in item[1] %}

{{ item[4] }}

{%else%} {{ item[4] }} {% endif %}
{% if item[21]['protein'] %} {{ item[21]['protein']['uniquename'] }} {% else %}

{{ "NA" }}

{% endif %}
{{ item[19] or "NA" }} {{ item[1] or "NA" }} {{ item[17] }} {{ item[18] or "NA" }} {{ item[0] or "NA" }} {{ item[7] or "NA" }} {{ item[9] or "NA" }} {{ item[10] or "NA" }} {{ item[2] or "NA" }} {% if item[21]['pathway'] and item[21]['pathway']|length >= 1 %} {% for pathway in item[21]['pathway'] %} {% if pathway['accession'].startswith("mtu")%} {% set url = "http://www.genome.jp/dbget-bin/www_bget?" %} {% else %} {% set url = "https://reactome.org/content/detail/" %} {% endif %}

{{ pathway['name'] }}

{% endfor %} {% else %}

{{ "NA" }}

{% endif %}
CHR GENE LOCUS PRODUCT TYPE EFFECT POS REF ALT BIOTYPE NUCLEOTIDE CONSEQUENCE IMPACT PATHWAY
{% else %}

No variant data was found for this VCF file. Is it a SnpEff annotated VCF file?

Kindly check if the 'ANN' field is present.

{% endif %} {% endblock %}