Index

_ | A | C | D | E | F | G | H | I | L | M | N | P | R | S | T | V | W

_

__call__() (craw.argparse_util.VersionAction method)
__delitem__() (craw.wig.Genome method)
__getitem__() (craw.wig.Chromosome method)
(craw.wig.Genome method)
__getnewargs__() (craw.annotation.Idx method)
__init__() (craw.annotation.AnnotationParser method)
(craw.annotation.Entry method)
(craw.heatmap.Mark method)
(craw.wig.Chromosome method)
(craw.wig.Chunk method)
(craw.wig.WigParser method)
__len__() (craw.wig.Chromosome method)
__new__() (craw.annotation.Idx static method)
__repr__() (craw.annotation.Idx method)
__setitem__() (craw.wig.Chromosome method)
__weakref__ (craw.annotation.AnnotationParser attribute)
(craw.annotation.Entry attribute)
(craw.heatmap.Mark attribute)
(craw.wig.Chromosome attribute)
(craw.wig.Chunk attribute)
(craw.wig.Genome attribute)
(craw.wig.WigError attribute)
(craw.wig.WigParser attribute)
_asdict() (craw.annotation.Idx method)
_color_converter() (craw.heatmap.Mark method)
_convert() (craw.annotation.Entry method)
_estimate_memory() (craw.wig.Chromosome method)
_extend() (craw.wig.Chromosome method)
_get_matrix_bound() (craw.heatmap.Mark method)
_make() (craw.annotation.Idx class method)
_replace() (craw.annotation.Idx method)
_sort_by_gene_size() (in module craw.heatmap)
_sort_using_col() (in module craw.heatmap)
_sort_using_file() (in module craw.heatmap)
_switch_start_stop() (craw.annotation.Entry method)

A

add() (craw.wig.Genome method)
AnnotationParser (class in craw.annotation)

C

Chromosome (class in craw.wig)
chromosome (craw.annotation.Entry attribute)
Chunk (class in craw.wig)
col_name (craw.annotation.Idx attribute)
craw (module)
craw.annotation (module)
craw.argparse_util (module)
craw.coverage (module)
craw.heatmap (module)
craw.wig (module)
crop_matrix() (in module craw.heatmap)

D

draw_heatmap() (in module craw.heatmap)
draw_one_matrix() (in module craw.heatmap)
draw_raw_image() (in module craw.heatmap)

E

Entry (class in craw.annotation)

F

FixedChunk (class in craw.wig)

G

Genome (class in craw.wig)
get_annotations() (craw.annotation.AnnotationParser method)
get_bam_coverage() (in module craw.coverage)
get_coverage_function() (in module craw.coverage)
get_data() (in module craw.heatmap)
get_version_message() (in module craw)
get_wig_coverage() (in module craw.coverage)

H

header (craw.annotation.Entry attribute)

I

Idx (class in craw.annotation)
idx (craw.annotation.Idx attribute)
init_logger() (in module craw)
is_comment_line() (craw.wig.WigParser static method)
is_data_line() (craw.wig.WigParser method)
is_declaration_line() (craw.wig.WigParser method)
is_fixed_step() (craw.wig.Chunk method)
(craw.wig.FixedChunk method)
(craw.wig.VariableChunk method)
is_track_line() (craw.wig.WigParser static method)

L

lin_norm() (in module craw.heatmap)
lin_norm_row_by_row() (in module craw.heatmap)
log_norm() (in module craw.heatmap)
log_norm_row_by_row() (in module craw.heatmap)

M

Mark (class in craw.heatmap)
max() (craw.annotation.AnnotationParser method)

N

new_entry_type() (in module craw.annotation)

P

parse() (craw.wig.WigParser method)
parse_data_line() (craw.wig.Chunk method)
(craw.wig.FixedChunk method)
(craw.wig.VariableChunk method)
(craw.wig.WigParser method)
parse_declaration_line() (craw.wig.WigParser method)
parse_track_line() (craw.wig.WigParser method)

R

ref (craw.annotation.Entry attribute)
remove_metadata() (in module craw.heatmap)

S

sort() (in module craw.heatmap)
split_data() (in module craw.heatmap)
start (craw.annotation.Entry attribute)
stop (craw.annotation.Entry attribute)
strand (craw.annotation.Entry attribute)

T

to_px() (craw.heatmap.Mark method)

V

VariableChunk (class in craw.wig)
VersionAction (class in craw.argparse_util)

W

WigError
WigParser (class in craw.wig)