Source code for craw
###########################################################################
# #
# This file is part of Counter RNAseq Window (craw) package. #
# #
# Authors: Bertrand Néron #
# Copyright © 2017 Institut Pasteur (Paris). #
# see COPYRIGHT file for details. #
# #
# craw is free software: you can redistribute it and/or modify #
# it under the terms of the GNU General Public License as published by #
# the Free Software Foundation, either version 3 of the License, or #
# (at your option) any later version. #
# #
# craw is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. #
# See the GNU General Public License for more details. #
# #
# You should have received a copy of the GNU General Public License #
# along with craw (see COPYING file). #
# If not, see <http://www.gnu.org/licenses/>. #
# #
###########################################################################
import sys
import logging
__version__ = '$VERSION'
[docs]def get_version_message():
"""
:return: A human readable version of the craw package version
:rtype: string
"""
# if I keep '$ VERSION' (without space) as is
# the setup.py will replace it by the value set in setup
# so the test become True even if craw is installed using setup.py
if __version__ == '$' + 'VERSION':
version = "NOT packaged, it should be a development version"
else:
version = __version__
version_text = "craw {0} | Python {1}.{2}".format(version, sys.version_info.major, sys.version_info.minor)
return version_text
[docs]def init_logger(log_level):
"""
Initiate the "root" logger for craw library
all logger create in craw package inherits from this root logger
This logger write logs on sys.stderr
:param log_level: the level of the logger
:type log_level: int
"""
craw_log = logging.getLogger('craw')
handler = logging.StreamHandler()
formatter = logging.Formatter(fmt='{levelname} : {name} : {message}', style='{')
handler.setFormatter(formatter)
craw_log.addHandler(handler)
craw_log.setLevel(log_level)
craw_log.propagate = False