CONTRIBUTING.md
HISTORY.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
docs/data/sequencing_coverage_plot.html
docs/data/test.py
src/coverageStat.js
src/index.js
src/util.js
src/echarts/geneFeatures/getGeneFeatureRenderer.js
src/echarts/geneFeatures/getGeneFeaturesSeries.js
src/echarts/geneFeatures/shapePoints.js
src/echarts/getOption/getAxes.js
src/echarts/getOption/getCoverageChartOption.js
src/echarts/getOption/getDataSets.js
src/echarts/getOption/getDepthSeries.js
src/echarts/getOption/getGrids.js
src/echarts/getOption/getRegionAmpliconDepthSeries.js
src/echarts/getOption/getTooltips.js
src/echarts/getOption/getVariantHeatmapOption.js
src/echarts/getOption/getVariantSeries.js
tests/test_wgscovplot.py
tests/wgscovplot.test.js
tests/data/nCoV-2019.reference.fasta
tests/data/sequence_sars_cov2.gb
tests/data/tools/mosdepth/Sample1.per-base.bed.gz
tests/data/tools/mosdepth/Sample2.per-base.bed.gz
tests/data/tools/mosdepth/Sample3.per-base.bed.gz
tests/data/tools/variants/ivar/Sample3.snpsift.txt
tests/data/tools/variants/ivar/Sample3.vcf.gz
tests/data/tools/variants/nanopolish/Sample1.pass.vcf.gz
tests/data/tools/variants/nanopolish/Sample1.snpsift.txt
tests/data/tools/variants/nanopolish/Sample2.pass.vcf.gz
tests/data/tools/variants/nanopolish/Sample2.snpsift.txt
wgscovplot/__init__.py
wgscovplot/cli.py
wgscovplot/colors.py
wgscovplot/prepare_data.py
wgscovplot/resources.py
wgscovplot/util.py
wgscovplot/wgscovplot.py
wgscovplot.egg-info/PKG-INFO
wgscovplot.egg-info/SOURCES.txt
wgscovplot.egg-info/dependency_links.txt
wgscovplot.egg-info/entry_points.txt
wgscovplot.egg-info/not-zip-safe
wgscovplot.egg-info/requires.txt
wgscovplot.egg-info/top_level.txt
wgscovplot/readme/README.md
wgscovplot/tmpl/wgscovplot_controlmenu_gui.html
wgscovplot/tmpl/wgscovplot_dev_template.html
wgscovplot/tmpl/wgscovplot_prod_template.html
wgscovplot/tmpl/js/wgscovplot.dev.bundle.js
wgscovplot/tmpl/js/wgscovplot.js
wgscovplot/tmpl/js/wgscovplot.prod.bundle.js
wgscovplot/tools/__init__.py
wgscovplot/tools/mosdepth.py
wgscovplot/tools/variants.py